Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTPN9P43378 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
PTPN9P43378 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTPN9P43378 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTPN9P43378 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC16.67■□□□□ 0.26
PTPN9P43378 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
PTPN9P43378 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTPN9P43378 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTPN9P43378 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTPN9P43378 AC018892.3-201ENST00000623986 2499 ntBASIC16.67■□□□□ 0.26
PTPN9P43378 GRAMD4P3-201ENST00000621665 1669 ntBASIC16.67■□□□□ 0.26
PTPN9P43378 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTPN9P43378 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTPN9P43378 FO393414.2-201ENST00000405153 598 ntBASIC16.67■□□□□ 0.26
PTPN9P43378 MTND6P24-201ENST00000440466 518 ntBASIC16.67■□□□□ 0.26
PTPN9P43378 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTPN9P43378 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PTPN9P43378 AL079307.3-201ENST00000556114 283 ntBASIC16.67■□□□□ 0.26
PTPN9P43378 AC004449.1-201ENST00000564240 433 ntBASIC16.67■□□□□ 0.26
PTPN9P43378 LSM12-202ENST00000585388 942 ntTSL 3 BASIC16.67■□□□□ 0.26
PTPN9P43378 GPER1-207ENST00000619052 571 ntTSL 2 BASIC16.67■□□□□ 0.26
PTPN9P43378 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
PTPN9P43378 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PTPN9P43378 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.67■□□□□ 0.26
PTPN9P43378 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTPN9P43378 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC16.67■□□□□ 0.26
PTPN9P43378 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC16.67■□□□□ 0.26
PTPN9P43378 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
PTPN9P43378 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
PTPN9P43378 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTPN9P43378 TUBB3P1-201ENST00000405796 1332 ntBASIC16.67■□□□□ 0.26
PTPN9P43378 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PTPN9P43378 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTPN9P43378 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.67■□□□□ 0.26
PTPN9P43378 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTPN9P43378 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PTPN9P43378 LOX-206ENST00000639739 1626 ntTSL 5 BASIC16.67■□□□□ 0.26
PTPN9P43378 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC16.66■□□□□ 0.26
PTPN9P43378 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
PTPN9P43378 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
PTPN9P43378 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
PTPN9P43378 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PTPN9P43378 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTPN9P43378 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTPN9P43378 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PTPN9P43378 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTPN9P43378 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTPN9P43378 RAC2-202ENST00000401529 569 ntTSL 4 BASIC16.66■□□□□ 0.26
PTPN9P43378 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PTPN9P43378 HIST3H2BA-201ENST00000436555 524 ntBASIC16.66■□□□□ 0.26
PTPN9P43378 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC16.66■□□□□ 0.26
PTPN9P43378 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTPN9P43378 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PTPN9P43378 MDH2-205ENST00000461263 648 ntTSL 2 BASIC16.66■□□□□ 0.26
PTPN9P43378 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC16.66■□□□□ 0.26
PTPN9P43378 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.66■□□□□ 0.26
PTPN9P43378 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
PTPN9P43378 AC051619.7-201ENST00000568314 623 ntBASIC16.66■□□□□ 0.26
PTPN9P43378 PRR29-209ENST00000582540 967 ntTSL 2 BASIC16.66■□□□□ 0.26
PTPN9P43378 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC16.66■□□□□ 0.26
PTPN9P43378 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC16.66■□□□□ 0.26
PTPN9P43378 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.66■□□□□ 0.26
PTPN9P43378 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC16.66■□□□□ 0.26
PTPN9P43378 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTPN9P43378 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.66■□□□□ 0.26
PTPN9P43378 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTPN9P43378 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTPN9P43378 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTPN9P43378 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC16.66■□□□□ 0.26
PTPN9P43378 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTPN9P43378 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.66■□□□□ 0.26
PTPN9P43378 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC16.65■□□□□ 0.26
PTPN9P43378 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
PTPN9P43378 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN9P43378 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.65■□□□□ 0.26
PTPN9P43378 IMPDH1P4-201ENST00000445028 1534 ntBASIC16.65■□□□□ 0.26
PTPN9P43378 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN9P43378 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC16.65■□□□□ 0.26
PTPN9P43378 CETN4P-206ENST00000642099 2168 ntBASIC16.65■□□□□ 0.26
PTPN9P43378 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN9P43378 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
PTPN9P43378 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
PTPN9P43378 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC16.65■□□□□ 0.26
PTPN9P43378 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
PTPN9P43378 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
PTPN9P43378 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN9P43378 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC16.65■□□□□ 0.26
PTPN9P43378 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN9P43378 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN9P43378 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
PTPN9P43378 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN9P43378 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC16.65■□□□□ 0.26
PTPN9P43378 AZGP1P1-201ENST00000411909 902 ntBASIC16.65■□□□□ 0.26
PTPN9P43378 AL080243.2-201ENST00000418783 582 ntBASIC16.65■□□□□ 0.26
PTPN9P43378 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN9P43378 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN9P43378 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN9P43378 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC16.65■□□□□ 0.26
PTPN9P43378 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PTPN9P43378 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms