Protein–RNA interactions for Protein: P41273

TNFSF9, Tumor necrosis factor ligand superfamily member 9, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF9P41273 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.34■□□□□ 0.37
TNFSF9P41273 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TNFSF9P41273 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TNFSF9P41273 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TNFSF9P41273 AL513523.2-202ENST00000427283 2040 ntBASIC17.33■□□□□ 0.37
TNFSF9P41273 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC17.33■□□□□ 0.37
TNFSF9P41273 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
TNFSF9P41273 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TNFSF9P41273 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
TNFSF9P41273 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
TNFSF9P41273 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
TNFSF9P41273 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC17.33■□□□□ 0.36
TNFSF9P41273 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TNFSF9P41273 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TNFSF9P41273 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TNFSF9P41273 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
TNFSF9P41273 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
TNFSF9P41273 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TNFSF9P41273 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TNFSF9P41273 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
TNFSF9P41273 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC17.33■□□□□ 0.36
TNFSF9P41273 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC17.33■□□□□ 0.36
TNFSF9P41273 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC17.33■□□□□ 0.36
TNFSF9P41273 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC17.33■□□□□ 0.36
TNFSF9P41273 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC17.33■□□□□ 0.36
TNFSF9P41273 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC17.33■□□□□ 0.36
TNFSF9P41273 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC17.33■□□□□ 0.36
TNFSF9P41273 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC17.33■□□□□ 0.36
TNFSF9P41273 AC135586.1-201ENST00000539323 574 ntBASIC17.33■□□□□ 0.36
TNFSF9P41273 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC17.33■□□□□ 0.36
TNFSF9P41273 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC17.33■□□□□ 0.36
TNFSF9P41273 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TNFSF9P41273 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TNFSF9P41273 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.36
TNFSF9P41273 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC17.33■□□□□ 0.36
TNFSF9P41273 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
TNFSF9P41273 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TNFSF9P41273 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TNFSF9P41273 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC17.33■□□□□ 0.36
TNFSF9P41273 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC17.32■□□□□ 0.36
TNFSF9P41273 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TNFSF9P41273 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TNFSF9P41273 GRN-214ENST00000589265 1632 ntTSL 5 BASIC17.32■□□□□ 0.36
TNFSF9P41273 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC17.32■□□□□ 0.36
TNFSF9P41273 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TNFSF9P41273 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TNFSF9P41273 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
TNFSF9P41273 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
TNFSF9P41273 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC17.32■□□□□ 0.36
TNFSF9P41273 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
TNFSF9P41273 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC17.32■□□□□ 0.36
TNFSF9P41273 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC17.32■□□□□ 0.36
TNFSF9P41273 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC17.32■□□□□ 0.36
TNFSF9P41273 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
TNFSF9P41273 PHKG1P2-201ENST00000457537 863 ntBASIC17.32■□□□□ 0.36
TNFSF9P41273 OARD1-208ENST00000469104 704 ntTSL 2 BASIC17.32■□□□□ 0.36
TNFSF9P41273 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC17.32■□□□□ 0.36
TNFSF9P41273 REEP4-207ENST00000523293 913 ntTSL 3 BASIC17.32■□□□□ 0.36
TNFSF9P41273 GREM1-201ENST00000560677 623 ntTSL 4 BASIC17.32■□□□□ 0.36
TNFSF9P41273 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
TNFSF9P41273 MIR3197-201ENST00000582241 73 ntBASIC17.32■□□□□ 0.36
TNFSF9P41273 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC17.32■□□□□ 0.36
TNFSF9P41273 LINC02084-201ENST00000606069 1096 ntBASIC17.32■□□□□ 0.36
TNFSF9P41273 AC008761.3-201ENST00000624803 892 ntBASIC17.32■□□□□ 0.36
TNFSF9P41273 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC17.32■□□□□ 0.36
TNFSF9P41273 AC004461.2-201ENST00000629517 803 ntBASIC17.32■□□□□ 0.36
TNFSF9P41273 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.32■□□□□ 0.36
TNFSF9P41273 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TNFSF9P41273 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
TNFSF9P41273 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
TNFSF9P41273 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TNFSF9P41273 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
TNFSF9P41273 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC17.32■□□□□ 0.36
TNFSF9P41273 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TNFSF9P41273 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
TNFSF9P41273 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC17.31■□□□□ 0.36
TNFSF9P41273 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC17.31■□□□□ 0.36
TNFSF9P41273 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TNFSF9P41273 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
TNFSF9P41273 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
TNFSF9P41273 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
TNFSF9P41273 AC011477.6-201ENST00000604980 1927 ntBASIC17.31■□□□□ 0.36
TNFSF9P41273 VILL-207ENST00000465644 1857 ntTSL 5 BASIC17.31■□□□□ 0.36
TNFSF9P41273 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
TNFSF9P41273 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC17.31■□□□□ 0.36
TNFSF9P41273 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.31■□□□□ 0.36
TNFSF9P41273 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TNFSF9P41273 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC17.31■□□□□ 0.36
TNFSF9P41273 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC17.31■□□□□ 0.36
TNFSF9P41273 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TNFSF9P41273 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
TNFSF9P41273 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TNFSF9P41273 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TNFSF9P41273 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TNFSF9P41273 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TNFSF9P41273 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC17.31■□□□□ 0.36
TNFSF9P41273 AC074338.1-201ENST00000416825 156 ntBASIC17.31■□□□□ 0.36
TNFSF9P41273 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC17.31■□□□□ 0.36
TNFSF9P41273 EHF-205ENST00000527935 557 ntTSL 2 BASIC17.31■□□□□ 0.36
TNFSF9P41273 HNRNPUP1-201ENST00000554987 333 ntBASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms