Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC15.96■□□□□ 0.15
PDGFBP01127 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PDGFBP01127 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
PDGFBP01127 SDCCAG3P2-201ENST00000326105 1023 ntBASIC15.96■□□□□ 0.15
PDGFBP01127 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
PDGFBP01127 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PDGFBP01127 MIR769-201ENST00000390225 118 ntBASIC15.96■□□□□ 0.15
PDGFBP01127 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PDGFBP01127 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PDGFBP01127 POM121L10P-201ENST00000436994 1285 ntBASIC15.96■□□□□ 0.15
PDGFBP01127 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC15.96■□□□□ 0.15
PDGFBP01127 ATP6V0CP2-201ENST00000469409 207 ntBASIC15.96■□□□□ 0.15
PDGFBP01127 SDHD-202ENST00000525291 790 ntTSL 3 BASIC15.96■□□□□ 0.15
PDGFBP01127 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PDGFBP01127 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PDGFBP01127 PRKXP1-201ENST00000561423 1122 ntBASIC15.96■□□□□ 0.15
PDGFBP01127 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC15.96■□□□□ 0.15
PDGFBP01127 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC15.96■□□□□ 0.15
PDGFBP01127 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC15.96■□□□□ 0.15
PDGFBP01127 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC15.96■□□□□ 0.15
PDGFBP01127 AL133499.1-201ENST00000596207 608 ntBASIC15.96■□□□□ 0.15
PDGFBP01127 AC026740.1-201ENST00000607068 791 ntBASIC15.96■□□□□ 0.15
PDGFBP01127 AC018635.2-201ENST00000608625 364 ntBASIC15.96■□□□□ 0.15
PDGFBP01127 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC15.96■□□□□ 0.15
PDGFBP01127 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC15.96■□□□□ 0.15
PDGFBP01127 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PDGFBP01127 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PDGFBP01127 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
PDGFBP01127 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
PDGFBP01127 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC15.96■□□□□ 0.15
PDGFBP01127 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
PDGFBP01127 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
PDGFBP01127 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.14
PDGFBP01127 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.96■□□□□ 0.14
PDGFBP01127 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
PDGFBP01127 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
PDGFBP01127 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.14
PDGFBP01127 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
PDGFBP01127 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.14
PDGFBP01127 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.14
PDGFBP01127 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
PDGFBP01127 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PDGFBP01127 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC15.95■□□□□ 0.14
PDGFBP01127 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
PDGFBP01127 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC15.95■□□□□ 0.14
PDGFBP01127 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC15.95■□□□□ 0.14
PDGFBP01127 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
PDGFBP01127 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
PDGFBP01127 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PDGFBP01127 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC15.95■□□□□ 0.14
PDGFBP01127 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PDGFBP01127 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
PDGFBP01127 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PDGFBP01127 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PDGFBP01127 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC15.95■□□□□ 0.14
PDGFBP01127 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PDGFBP01127 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PDGFBP01127 AC114501.1-201ENST00000445949 172 ntBASIC15.95■□□□□ 0.14
PDGFBP01127 HSPB1P2-201ENST00000448722 546 ntBASIC15.95■□□□□ 0.14
PDGFBP01127 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC15.95■□□□□ 0.14
PDGFBP01127 COX5BP1-201ENST00000507622 393 ntBASIC15.95■□□□□ 0.14
PDGFBP01127 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC15.95■□□□□ 0.14
PDGFBP01127 AC044849.1-201ENST00000519737 1188 ntBASIC15.95■□□□□ 0.14
PDGFBP01127 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC15.95■□□□□ 0.14
PDGFBP01127 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PDGFBP01127 AC243562.2-201ENST00000561247 970 ntBASIC15.95■□□□□ 0.14
PDGFBP01127 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC15.95■□□□□ 0.14
PDGFBP01127 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC15.95■□□□□ 0.14
PDGFBP01127 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC15.95■□□□□ 0.14
PDGFBP01127 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC15.95■□□□□ 0.14
PDGFBP01127 AC107373.2-201ENST00000607735 490 ntBASIC15.95■□□□□ 0.14
PDGFBP01127 AC006453.4-201ENST00000636949 1252 ntBASIC15.95■□□□□ 0.14
PDGFBP01127 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PDGFBP01127 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
PDGFBP01127 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PDGFBP01127 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
PDGFBP01127 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.95■□□□□ 0.14
PDGFBP01127 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PDGFBP01127 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC15.95■□□□□ 0.14
PDGFBP01127 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PDGFBP01127 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
PDGFBP01127 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
PDGFBP01127 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PDGFBP01127 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
PDGFBP01127 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC15.95■□□□□ 0.14
PDGFBP01127 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PDGFBP01127 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
PDGFBP01127 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PDGFBP01127 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC15.94■□□□□ 0.14
PDGFBP01127 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
PDGFBP01127 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
PDGFBP01127 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
PDGFBP01127 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PDGFBP01127 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC15.94■□□□□ 0.14
PDGFBP01127 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
PDGFBP01127 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.94■□□□□ 0.14
PDGFBP01127 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PDGFBP01127 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PDGFBP01127 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
PDGFBP01127 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms