Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC15.84■□□□□ 0.13
VPS4BO75351 PNKD-204ENST00000436005 978 ntTSL 5 BASIC15.84■□□□□ 0.13
VPS4BO75351 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC15.84■□□□□ 0.13
VPS4BO75351 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC15.84■□□□□ 0.13
VPS4BO75351 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC15.84■□□□□ 0.13
VPS4BO75351 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
VPS4BO75351 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
VPS4BO75351 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC15.84■□□□□ 0.13
VPS4BO75351 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC15.84■□□□□ 0.13
VPS4BO75351 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4BO75351 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
VPS4BO75351 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4BO75351 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
VPS4BO75351 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC15.84■□□□□ 0.13
VPS4BO75351 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC15.84■□□□□ 0.13
VPS4BO75351 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4BO75351 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4BO75351 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4BO75351 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4BO75351 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC15.84■□□□□ 0.13
VPS4BO75351 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4BO75351 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC15.84■□□□□ 0.13
VPS4BO75351 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.83■□□□□ 0.13
VPS4BO75351 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
VPS4BO75351 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
VPS4BO75351 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC15.83■□□□□ 0.13
VPS4BO75351 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.13
VPS4BO75351 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
VPS4BO75351 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.13
VPS4BO75351 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
VPS4BO75351 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
VPS4BO75351 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
VPS4BO75351 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC15.83■□□□□ 0.13
VPS4BO75351 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
VPS4BO75351 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
VPS4BO75351 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
VPS4BO75351 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
VPS4BO75351 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC15.83■□□□□ 0.13
VPS4BO75351 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC15.83■□□□□ 0.12
VPS4BO75351 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VPS4BO75351 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VPS4BO75351 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VPS4BO75351 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
VPS4BO75351 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VPS4BO75351 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
VPS4BO75351 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VPS4BO75351 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC15.83■□□□□ 0.12
VPS4BO75351 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VPS4BO75351 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VPS4BO75351 FAM86GP-201ENST00000448322 971 ntBASIC15.83■□□□□ 0.12
VPS4BO75351 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
VPS4BO75351 DAD1-205ENST00000543337 501 ntTSL 3 BASIC15.83■□□□□ 0.12
VPS4BO75351 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC15.83■□□□□ 0.12
VPS4BO75351 RIN3-211ENST00000557762 517 ntTSL 3 BASIC15.83■□□□□ 0.12
VPS4BO75351 MIR3909-201ENST00000579518 119 ntBASIC15.83■□□□□ 0.12
VPS4BO75351 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC15.83■□□□□ 0.12
VPS4BO75351 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VPS4BO75351 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC15.83■□□□□ 0.12
VPS4BO75351 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC15.83■□□□□ 0.12
VPS4BO75351 AC007064.4-201ENST00000637740 555 ntBASIC15.83■□□□□ 0.12
VPS4BO75351 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
VPS4BO75351 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
VPS4BO75351 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
VPS4BO75351 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VPS4BO75351 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC15.83■□□□□ 0.12
VPS4BO75351 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VPS4BO75351 AC092919.2-201ENST00000623631 1645 ntBASIC15.83■□□□□ 0.12
VPS4BO75351 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
VPS4BO75351 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
VPS4BO75351 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC15.83■□□□□ 0.12
VPS4BO75351 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS4BO75351 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
VPS4BO75351 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS4BO75351 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS4BO75351 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS4BO75351 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS4BO75351 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
VPS4BO75351 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS4BO75351 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
VPS4BO75351 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS4BO75351 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.82■□□□□ 0.12
VPS4BO75351 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC15.82■□□□□ 0.12
VPS4BO75351 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS4BO75351 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS4BO75351 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
VPS4BO75351 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC15.82■□□□□ 0.12
VPS4BO75351 AC074386.1-202ENST00000463561 864 ntBASIC15.82■□□□□ 0.12
VPS4BO75351 RNA5SP421-201ENST00000516864 134 ntBASIC15.82■□□□□ 0.12
VPS4BO75351 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
VPS4BO75351 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VPS4BO75351 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC15.82■□□□□ 0.12
VPS4BO75351 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC15.82■□□□□ 0.12
VPS4BO75351 MIR4515-201ENST00000584082 81 ntBASIC15.82■□□□□ 0.12
VPS4BO75351 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC15.82■□□□□ 0.12
VPS4BO75351 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC15.82■□□□□ 0.12
VPS4BO75351 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VPS4BO75351 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS4BO75351 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
VPS4BO75351 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS4BO75351 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 83.8 ms