Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC14.2□□□□□ -0.14
LMX1BO60663 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LMX1BO60663 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
LMX1BO60663 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
LMX1BO60663 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LMX1BO60663 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC14.19□□□□□ -0.14
LMX1BO60663 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LMX1BO60663 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LMX1BO60663 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
LMX1BO60663 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
LMX1BO60663 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
LMX1BO60663 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LMX1BO60663 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC14.19□□□□□ -0.14
LMX1BO60663 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
LMX1BO60663 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LMX1BO60663 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC14.19□□□□□ -0.14
LMX1BO60663 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
LMX1BO60663 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
LMX1BO60663 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LMX1BO60663 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LMX1BO60663 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LMX1BO60663 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
LMX1BO60663 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
LMX1BO60663 FAM86GP-201ENST00000448322 971 ntBASIC14.19□□□□□ -0.14
LMX1BO60663 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LMX1BO60663 AC023141.5-201ENST00000458585 616 ntBASIC14.19□□□□□ -0.14
LMX1BO60663 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LMX1BO60663 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
LMX1BO60663 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC14.19□□□□□ -0.14
LMX1BO60663 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC14.19□□□□□ -0.14
LMX1BO60663 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
LMX1BO60663 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC14.19□□□□□ -0.14
LMX1BO60663 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC14.19□□□□□ -0.14
LMX1BO60663 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LMX1BO60663 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC14.19□□□□□ -0.14
LMX1BO60663 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC14.19□□□□□ -0.14
LMX1BO60663 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LMX1BO60663 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
LMX1BO60663 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LMX1BO60663 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC14.19□□□□□ -0.14
LMX1BO60663 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LMX1BO60663 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
LMX1BO60663 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LMX1BO60663 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC14.19□□□□□ -0.14
LMX1BO60663 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
LMX1BO60663 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC14.19□□□□□ -0.14
LMX1BO60663 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LMX1BO60663 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
LMX1BO60663 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC14.19□□□□□ -0.14
LMX1BO60663 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC14.19□□□□□ -0.14
LMX1BO60663 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LMX1BO60663 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
LMX1BO60663 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
LMX1BO60663 ANKRD26P3-201ENST00000454044 2748 ntBASIC14.19□□□□□ -0.14
LMX1BO60663 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC14.19□□□□□ -0.14
LMX1BO60663 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC14.19□□□□□ -0.14
LMX1BO60663 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC14.18□□□□□ -0.14
LMX1BO60663 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LMX1BO60663 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LMX1BO60663 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LMX1BO60663 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LMX1BO60663 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
LMX1BO60663 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LMX1BO60663 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LMX1BO60663 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LMX1BO60663 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LMX1BO60663 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
LMX1BO60663 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
LMX1BO60663 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LMX1BO60663 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LMX1BO60663 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LMX1BO60663 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LMX1BO60663 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
LMX1BO60663 AC023824.1-201ENST00000562945 2975 ntBASIC14.18□□□□□ -0.14
LMX1BO60663 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC14.18□□□□□ -0.14
LMX1BO60663 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LMX1BO60663 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC14.18□□□□□ -0.14
LMX1BO60663 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LMX1BO60663 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
LMX1BO60663 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LMX1BO60663 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC14.18□□□□□ -0.14
LMX1BO60663 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LMX1BO60663 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LMX1BO60663 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
LMX1BO60663 HLA-DRB6-201ENST00000411500 1235 ntBASIC14.18□□□□□ -0.14
LMX1BO60663 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LMX1BO60663 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC14.18□□□□□ -0.14
LMX1BO60663 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
LMX1BO60663 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC14.18□□□□□ -0.14
LMX1BO60663 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC14.18□□□□□ -0.14
LMX1BO60663 AC112191.1-201ENST00000523689 701 ntBASIC14.18□□□□□ -0.14
LMX1BO60663 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
LMX1BO60663 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
LMX1BO60663 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LMX1BO60663 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LMX1BO60663 LINC00628-201ENST00000628516 1289 ntBASIC14.18□□□□□ -0.14
LMX1BO60663 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LMX1BO60663 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
LMX1BO60663 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LMX1BO60663 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms