Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
MSH5O43196 RNU6-694P-201ENST00000364071 147 ntBASIC22.48■■□□□ 1.19
MSH5O43196 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC22.48■■□□□ 1.19
MSH5O43196 MRPL20P1-201ENST00000400819 433 ntBASIC22.48■■□□□ 1.19
MSH5O43196 LINC01424-201ENST00000417820 1031 ntTSL 2 BASIC22.48■■□□□ 1.19
MSH5O43196 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC22.48■■□□□ 1.19
MSH5O43196 TPTE2P6-202ENST00000445572 1007 ntBASIC22.48■■□□□ 1.19
MSH5O43196 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC22.48■■□□□ 1.19
MSH5O43196 AC021146.8-201ENST00000507455 733 ntBASIC22.48■■□□□ 1.19
MSH5O43196 AC022826.1-201ENST00000519383 805 ntBASIC22.48■■□□□ 1.19
MSH5O43196 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
MSH5O43196 RBM7-207ENST00000544582 692 ntTSL 3 BASIC22.48■■□□□ 1.19
MSH5O43196 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC22.48■■□□□ 1.19
MSH5O43196 AC103996.2-201ENST00000556763 915 ntTSL 3 BASIC22.48■■□□□ 1.19
MSH5O43196 AC105227.2-201ENST00000615075 605 ntBASIC22.48■■□□□ 1.19
MSH5O43196 AC010654.1-201ENST00000615722 808 ntBASIC22.48■■□□□ 1.19
MSH5O43196 AC091812.2-201ENST00000619081 385 ntBASIC22.48■■□□□ 1.19
MSH5O43196 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
MSH5O43196 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC22.48■■□□□ 1.19
MSH5O43196 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
MSH5O43196 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC22.48■■□□□ 1.19
MSH5O43196 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC22.48■■□□□ 1.19
MSH5O43196 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC22.48■■□□□ 1.19
MSH5O43196 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC22.48■■□□□ 1.19
MSH5O43196 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
MSH5O43196 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC22.47■■□□□ 1.19
MSH5O43196 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC22.47■■□□□ 1.19
MSH5O43196 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
MSH5O43196 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
MSH5O43196 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC22.47■■□□□ 1.19
MSH5O43196 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC22.47■■□□□ 1.19
MSH5O43196 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
MSH5O43196 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
MSH5O43196 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC22.47■■□□□ 1.19
MSH5O43196 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
MSH5O43196 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
MSH5O43196 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
MSH5O43196 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
MSH5O43196 STOM-202ENST00000347359 870 ntTSL 2 BASIC22.47■■□□□ 1.19
MSH5O43196 AL117339.1-201ENST00000419779 428 ntTSL 2 BASIC22.47■■□□□ 1.19
MSH5O43196 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC22.47■■□□□ 1.19
MSH5O43196 AC006460.1-201ENST00000421437 808 ntTSL 5 BASIC22.47■■□□□ 1.19
MSH5O43196 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
MSH5O43196 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC22.47■■□□□ 1.19
MSH5O43196 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
MSH5O43196 MTND1P29-201ENST00000448112 647 ntBASIC22.47■■□□□ 1.19
MSH5O43196 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
MSH5O43196 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
MSH5O43196 AC109322.1-201ENST00000524499 1264 ntBASIC22.47■■□□□ 1.19
MSH5O43196 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC22.47■■□□□ 1.19
MSH5O43196 DUT-210ENST00000559935 569 ntTSL 3 BASIC22.47■■□□□ 1.19
MSH5O43196 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC22.47■■□□□ 1.19
MSH5O43196 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC22.47■■□□□ 1.19
MSH5O43196 ZNF525-206ENST00000593918 590 ntTSL 5 BASIC22.47■■□□□ 1.19
MSH5O43196 FBXW7-212ENST00000604872 970 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
MSH5O43196 AC012213.4-201ENST00000606457 354 ntBASIC22.47■■□□□ 1.19
MSH5O43196 AC093726.2-201ENST00000609134 679 ntBASIC22.47■■□□□ 1.19
MSH5O43196 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC22.47■■□□□ 1.19
MSH5O43196 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
MSH5O43196 AC073911.2-201ENST00000624989 468 ntBASIC22.47■■□□□ 1.19
MSH5O43196 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC22.47■■□□□ 1.19
MSH5O43196 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
MSH5O43196 FXR1-220ENST00000491062 1768 ntTSL 2 BASIC22.47■■□□□ 1.19
MSH5O43196 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC22.47■■□□□ 1.19
MSH5O43196 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC22.47■■□□□ 1.19
MSH5O43196 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
MSH5O43196 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
MSH5O43196 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
MSH5O43196 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
MSH5O43196 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
MSH5O43196 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
MSH5O43196 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
MSH5O43196 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC22.47■■□□□ 1.19
MSH5O43196 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
MSH5O43196 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
MSH5O43196 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
MSH5O43196 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC22.46■■□□□ 1.19
MSH5O43196 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
MSH5O43196 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC22.46■■□□□ 1.19
MSH5O43196 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
MSH5O43196 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC22.46■■□□□ 1.19
MSH5O43196 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
MSH5O43196 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC22.46■■□□□ 1.19
MSH5O43196 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC22.46■■□□□ 1.19
MSH5O43196 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
MSH5O43196 SNCG-201ENST00000348795 684 ntTSL 2 BASIC22.46■■□□□ 1.19
MSH5O43196 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC22.46■■□□□ 1.19
MSH5O43196 AC004461.1-201ENST00000412461 403 ntBASIC22.46■■□□□ 1.19
MSH5O43196 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC22.46■■□□□ 1.19
MSH5O43196 AC103564.2-201ENST00000432853 1299 ntBASIC22.46■■□□□ 1.19
MSH5O43196 AL356277.3-202ENST00000436672 587 ntTSL 3 BASIC22.46■■□□□ 1.19
MSH5O43196 NPM1P23-201ENST00000440193 849 ntBASIC22.46■■□□□ 1.19
MSH5O43196 FAM86GP-201ENST00000448322 971 ntBASIC22.46■■□□□ 1.19
MSH5O43196 PQLC2L-204ENST00000459838 850 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
MSH5O43196 NDUFA5P5-201ENST00000468361 342 ntBASIC22.46■■□□□ 1.19
MSH5O43196 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
MSH5O43196 LINC02114-201ENST00000503757 801 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
MSH5O43196 PTPN20-219ENST00000508602 742 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
MSH5O43196 PTPN20-221ENST00000509599 945 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
MSH5O43196 PTPN20-222ENST00000509774 788 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms