Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AC020765.3-201ENST00000613051 740 ntBASIC13.77□□□□□ -0.21
SDCBPO00560 WT1-AS_2.1-201ENST00000613208 137 ntBASIC13.77□□□□□ -0.21
SDCBPO00560 MIR7706-201ENST00000613747 67 ntBASIC13.77□□□□□ -0.21
SDCBPO00560 BID-213ENST00000615414 2236 ntTSL 5 BASIC13.77□□□□□ -0.21
SDCBPO00560 AC005622.1-201ENST00000636801 1703 ntBASIC13.77□□□□□ -0.21
SDCBPO00560 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC13.77□□□□□ -0.21
SDCBPO00560 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SDCBPO00560 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SDCBPO00560 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SDCBPO00560 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
SDCBPO00560 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC13.77□□□□□ -0.21
SDCBPO00560 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC13.77□□□□□ -0.21
SDCBPO00560 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SDCBPO00560 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SDCBPO00560 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SDCBPO00560 PGR-210ENST00000619228 3038 ntTSL 5 BASIC13.77□□□□□ -0.21
SDCBPO00560 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SDCBPO00560 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
SDCBPO00560 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SDCBPO00560 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SDCBPO00560 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SDCBPO00560 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SDCBPO00560 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SDCBPO00560 AC023157.3-201ENST00000619086 2088 ntBASIC13.76□□□□□ -0.21
SDCBPO00560 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SDCBPO00560 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
SDCBPO00560 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SDCBPO00560 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SDCBPO00560 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
SDCBPO00560 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC13.76□□□□□ -0.21
SDCBPO00560 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SDCBPO00560 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SDCBPO00560 AC006058.4-201ENST00000624016 1670 ntBASIC13.76□□□□□ -0.21
SDCBPO00560 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
SDCBPO00560 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC13.76□□□□□ -0.21
SDCBPO00560 PCDHA3-202ENST00000532566 4594 ntBASIC13.76□□□□□ -0.21
SDCBPO00560 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC13.76□□□□□ -0.21
SDCBPO00560 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
SDCBPO00560 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
SDCBPO00560 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SDCBPO00560 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC13.76□□□□□ -0.21
SDCBPO00560 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
SDCBPO00560 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SDCBPO00560 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC13.76□□□□□ -0.21
SDCBPO00560 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC13.76□□□□□ -0.21
SDCBPO00560 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SDCBPO00560 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
SDCBPO00560 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SDCBPO00560 TPM4P1-201ENST00000436100 807 ntBASIC13.76□□□□□ -0.21
SDCBPO00560 AC098831.1-202ENST00000438821 336 ntBASIC13.76□□□□□ -0.21
SDCBPO00560 PPIE-208ENST00000470213 927 ntTSL 3 BASIC13.76□□□□□ -0.21
SDCBPO00560 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC13.76□□□□□ -0.21
SDCBPO00560 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC13.76□□□□□ -0.21
SDCBPO00560 CIPC-205ENST00000555437 566 ntTSL 3 BASIC13.76□□□□□ -0.21
SDCBPO00560 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC13.76□□□□□ -0.21
SDCBPO00560 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC13.76□□□□□ -0.21
SDCBPO00560 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC13.76□□□□□ -0.21
SDCBPO00560 AP001005.1-201ENST00000571755 1248 ntBASIC13.76□□□□□ -0.21
SDCBPO00560 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC13.76□□□□□ -0.21
SDCBPO00560 AL049840.3-201ENST00000602669 611 ntBASIC13.76□□□□□ -0.21
SDCBPO00560 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC13.76□□□□□ -0.21
SDCBPO00560 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
SDCBPO00560 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SDCBPO00560 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SDCBPO00560 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
SDCBPO00560 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC13.76□□□□□ -0.21
SDCBPO00560 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SDCBPO00560 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SDCBPO00560 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SDCBPO00560 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SDCBPO00560 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SDCBPO00560 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC13.76□□□□□ -0.21
SDCBPO00560 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC13.76□□□□□ -0.21
SDCBPO00560 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC13.76□□□□□ -0.21
SDCBPO00560 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SDCBPO00560 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
SDCBPO00560 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
SDCBPO00560 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SDCBPO00560 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC13.76□□□□□ -0.21
SDCBPO00560 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SDCBPO00560 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC13.76□□□□□ -0.21
SDCBPO00560 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SDCBPO00560 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SDCBPO00560 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC13.75□□□□□ -0.21
SDCBPO00560 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SDCBPO00560 AC012569.1-201ENST00000591191 1524 ntBASIC13.75□□□□□ -0.21
SDCBPO00560 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SDCBPO00560 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
SDCBPO00560 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SDCBPO00560 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SDCBPO00560 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SDCBPO00560 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC13.75□□□□□ -0.21
SDCBPO00560 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
SDCBPO00560 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SDCBPO00560 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SDCBPO00560 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC13.75□□□□□ -0.21
SDCBPO00560 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC13.75□□□□□ -0.21
SDCBPO00560 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
SDCBPO00560 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
SDCBPO00560 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC13.75□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms