Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 PHKG1P2-201ENST00000457537 863 ntBASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 NAT9-222ENST00000583476 583 ntTSL 3 BASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 AC091812.3-201ENST00000621362 345 ntBASIC18.99■□□□□ 0.63
ZNF541Q9H0D2 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 PTPA-218ENST00000435132 618 ntTSL 2 BASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 RNA5SP486-201ENST00000515961 83 ntBASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 MBP-227ENST00000526111 581 ntTSL 4 BASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 NKG7-204ENST00000595217 816 ntTSL 2 BASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 KLK3-207ENST00000595952 969 ntTSL 3 BASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 AC006453.4-201ENST00000636949 1252 ntBASIC18.98■□□□□ 0.63
ZNF541Q9H0D2 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC18.97■□□□□ 0.63
ZNF541Q9H0D2 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC18.97■□□□□ 0.63
ZNF541Q9H0D2 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ZNF541Q9H0D2 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.97■□□□□ 0.63
ZNF541Q9H0D2 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
ZNF541Q9H0D2 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.97■□□□□ 0.63
ZNF541Q9H0D2 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
ZNF541Q9H0D2 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC18.97■□□□□ 0.63
ZNF541Q9H0D2 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
ZNF541Q9H0D2 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ZNF541Q9H0D2 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.97■□□□□ 0.63
ZNF541Q9H0D2 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ZNF541Q9H0D2 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ZNF541Q9H0D2 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
ZNF541Q9H0D2 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
ZNF541Q9H0D2 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
ZNF541Q9H0D2 CYP46A4P-201ENST00000414953 267 ntBASIC18.97■□□□□ 0.63
ZNF541Q9H0D2 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC18.97■□□□□ 0.63
ZNF541Q9H0D2 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC18.97■□□□□ 0.63
ZNF541Q9H0D2 FADS2-212ENST00000522639 360 ntTSL 5 BASIC18.97■□□□□ 0.63
ZNF541Q9H0D2 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
ZNF541Q9H0D2 FADS2-215ENST00000574708 385 ntTSL 3 BASIC18.97■□□□□ 0.63
ZNF541Q9H0D2 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
ZNF541Q9H0D2 ECM1P1-201ENST00000604092 1279 ntBASIC18.97■□□□□ 0.63
ZNF541Q9H0D2 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC18.97■□□□□ 0.63
ZNF541Q9H0D2 AP005019.2-201ENST00000615104 511 ntBASIC18.97■□□□□ 0.63
ZNF541Q9H0D2 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
ZNF541Q9H0D2 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC18.97■□□□□ 0.63
ZNF541Q9H0D2 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
ZNF541Q9H0D2 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ZNF541Q9H0D2 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ZNF541Q9H0D2 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms