Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 EDF1-203ENST00000371649 790 ntTSL 2 BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 TP53TG3HP-202ENST00000569755 579 ntBASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 TEX48-202ENST00000612244 662 ntTSL 3 BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 AL513477.1-201ENST00000602865 2407 ntBASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAIPQ9BWF2 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 NME2P1-201ENST00000426182 414 ntBASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 API5-211ENST00000534695 560 ntTSL 5 BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 AL391825.1-201ENST00000457671 1364 ntBASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 AC079328.2-201ENST00000561241 3354 ntBASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAIPQ9BWF2 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 HLA-A-202ENST00000376806 1854 ntBASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 LINC02199-201ENST00000506655 2702 ntBASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 DFFBP1-201ENST00000433250 979 ntBASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 RASL12-203ENST00000434605 982 ntTSL 2 BASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 POU5F1P6-201ENST00000466990 990 ntBASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 SDHAP3-202ENST00000515467 728 ntBASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms