Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 AC105250.1-201ENST00000509378 2057 ntBASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 ARHGAP23P1-201ENST00000562773 1937 ntBASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 AC090616.6-203ENST00000579186 1945 ntBASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 AC073621.1-201ENST00000392730 636 ntBASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 COPS8-203ENST00000409334 794 ntTSL 5 BASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 RAB17-203ENST00000409576 466 ntTSL 3 BASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 PMS2P4-201ENST00000412466 1052 ntBASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 AC093724.1-201ENST00000448659 1027 ntBASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 CIPC-205ENST00000555437 566 ntTSL 3 BASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 AL031055.1-201ENST00000606362 631 ntBASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC15.71■□□□□ 0.11
CCDC28BQ9BUN5 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
CCDC28BQ9BUN5 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC15.71■□□□□ 0.1
CCDC28BQ9BUN5 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.71■□□□□ 0.1
CCDC28BQ9BUN5 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.1
CCDC28BQ9BUN5 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC15.71■□□□□ 0.1
CCDC28BQ9BUN5 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.1
CCDC28BQ9BUN5 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.1
CCDC28BQ9BUN5 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 IGHV3-65-201ENST00000523210 341 ntBASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 AC021087.4-201ENST00000563761 564 ntBASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 HADH-212ENST00000638621 741 ntTSL 5 BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC15.7■□□□□ 0.1
CCDC28BQ9BUN5 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28BQ9BUN5 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms