Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ERCC4Q92889 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ERCC4Q92889 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
ERCC4Q92889 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC18.33■□□□□ 0.52
ERCC4Q92889 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC18.33■□□□□ 0.52
ERCC4Q92889 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC18.33■□□□□ 0.52
ERCC4Q92889 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
ERCC4Q92889 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
ERCC4Q92889 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
ERCC4Q92889 U82695.1-201ENST00000635752 1889 ntBASIC18.33■□□□□ 0.52
ERCC4Q92889 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
ERCC4Q92889 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC4Q92889 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC4Q92889 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC4Q92889 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC4Q92889 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC18.32■□□□□ 0.52
ERCC4Q92889 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
ERCC4Q92889 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC4Q92889 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
ERCC4Q92889 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC4Q92889 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
ERCC4Q92889 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC4Q92889 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC18.32■□□□□ 0.52
ERCC4Q92889 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC4Q92889 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC4Q92889 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC4Q92889 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC4Q92889 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC18.32■□□□□ 0.52
ERCC4Q92889 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC18.32■□□□□ 0.52
ERCC4Q92889 TPM4P1-201ENST00000436100 807 ntBASIC18.32■□□□□ 0.52
ERCC4Q92889 PRSS29P-201ENST00000440800 595 ntBASIC18.32■□□□□ 0.52
ERCC4Q92889 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC18.32■□□□□ 0.52
ERCC4Q92889 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC18.32■□□□□ 0.52
ERCC4Q92889 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC18.32■□□□□ 0.52
ERCC4Q92889 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC18.32■□□□□ 0.52
ERCC4Q92889 RPL28-209ENST00000560055 670 ntTSL 3 BASIC18.32■□□□□ 0.52
ERCC4Q92889 AL031432.2-201ENST00000566714 459 ntBASIC18.32■□□□□ 0.52
ERCC4Q92889 AL928711.1-201ENST00000570165 459 ntBASIC18.32■□□□□ 0.52
ERCC4Q92889 AC021097.1-201ENST00000607902 574 ntBASIC18.32■□□□□ 0.52
ERCC4Q92889 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
ERCC4Q92889 AL773604.1-201ENST00000617417 272 ntBASIC18.32■□□□□ 0.52
ERCC4Q92889 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC4Q92889 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC4Q92889 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC18.32■□□□□ 0.52
ERCC4Q92889 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
ERCC4Q92889 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC4Q92889 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC4Q92889 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC4Q92889 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
ERCC4Q92889 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC4Q92889 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC4Q92889 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
ERCC4Q92889 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
ERCC4Q92889 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
ERCC4Q92889 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC4Q92889 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC4Q92889 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC4Q92889 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
ERCC4Q92889 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC18.31■□□□□ 0.52
ERCC4Q92889 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ERCC4Q92889 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ERCC4Q92889 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
ERCC4Q92889 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
ERCC4Q92889 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC18.31■□□□□ 0.52
ERCC4Q92889 MIR600HG-201ENST00000449175 5984 ntBASIC18.31■□□□□ 0.52
ERCC4Q92889 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
ERCC4Q92889 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ERCC4Q92889 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
ERCC4Q92889 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ERCC4Q92889 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ERCC4Q92889 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ERCC4Q92889 RPS2P28-201ENST00000314255 741 ntBASIC18.31■□□□□ 0.52
ERCC4Q92889 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC18.31■□□□□ 0.52
ERCC4Q92889 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
ERCC4Q92889 VMO1-203ENST00000416307 712 ntTSL 2 BASIC18.31■□□□□ 0.52
ERCC4Q92889 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC18.31■□□□□ 0.52
ERCC4Q92889 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC18.31■□□□□ 0.52
ERCC4Q92889 HCG4B-203ENST00000450128 991 ntBASIC18.31■□□□□ 0.52
ERCC4Q92889 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC18.31■□□□□ 0.52
ERCC4Q92889 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC18.31■□□□□ 0.52
ERCC4Q92889 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC18.31■□□□□ 0.52
ERCC4Q92889 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC18.31■□□□□ 0.52
ERCC4Q92889 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC18.31■□□□□ 0.52
ERCC4Q92889 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC18.31■□□□□ 0.52
ERCC4Q92889 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ERCC4Q92889 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC18.31■□□□□ 0.52
ERCC4Q92889 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
ERCC4Q92889 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
ERCC4Q92889 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
ERCC4Q92889 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ERCC4Q92889 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
ERCC4Q92889 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
ERCC4Q92889 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
ERCC4Q92889 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
ERCC4Q92889 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ERCC4Q92889 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ERCC4Q92889 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ERCC4Q92889 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC18.3■□□□□ 0.52
ERCC4Q92889 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ERCC4Q92889 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms