Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 AC027307.3-201ENST00000594262 1100 ntBASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 SRP9-204ENST00000619790 377 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 AL035252.4-201ENST00000624174 288 ntBASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 GRAP-202ENST00000395635 834 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 AC055876.2-201ENST00000531834 546 ntBASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 HNRNPUP1-201ENST00000554987 333 ntBASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 AC239800.4-201ENST00000603712 296 ntBASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 AC018892.3-201ENST00000623986 2499 ntBASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC60Q8IWA6 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 AL391825.1-201ENST00000457671 1364 ntBASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 RPL13P2-201ENST00000440687 659 ntBASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 PHKG1P2-201ENST00000457537 863 ntBASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC60Q8IWA6 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 62.2 ms