Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AL031008.1-201ENST00000619963 541 ntBASIC15.87■□□□□ 0.13
PKNOX1P55347 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PKNOX1P55347 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PKNOX1P55347 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC15.87■□□□□ 0.13
PKNOX1P55347 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
PKNOX1P55347 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC15.87■□□□□ 0.13
PKNOX1P55347 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PKNOX1P55347 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC15.87■□□□□ 0.13
PKNOX1P55347 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PKNOX1P55347 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
PKNOX1P55347 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
PKNOX1P55347 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC15.87■□□□□ 0.13
PKNOX1P55347 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
PKNOX1P55347 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
PKNOX1P55347 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PKNOX1P55347 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
PKNOX1P55347 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
PKNOX1P55347 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC15.87■□□□□ 0.13
PKNOX1P55347 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC15.87■□□□□ 0.13
PKNOX1P55347 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC15.86■□□□□ 0.13
PKNOX1P55347 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
PKNOX1P55347 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PKNOX1P55347 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
PKNOX1P55347 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC15.86■□□□□ 0.13
PKNOX1P55347 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
PKNOX1P55347 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
PKNOX1P55347 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PKNOX1P55347 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PKNOX1P55347 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PKNOX1P55347 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PKNOX1P55347 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
PKNOX1P55347 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC15.86■□□□□ 0.13
PKNOX1P55347 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
PKNOX1P55347 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
PKNOX1P55347 RHOQP3-201ENST00000437982 621 ntBASIC15.86■□□□□ 0.13
PKNOX1P55347 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC15.86■□□□□ 0.13
PKNOX1P55347 KRT18P34-201ENST00000488218 1270 ntBASIC15.86■□□□□ 0.13
PKNOX1P55347 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC15.86■□□□□ 0.13
PKNOX1P55347 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PKNOX1P55347 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC15.86■□□□□ 0.13
PKNOX1P55347 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PKNOX1P55347 AC104692.2-201ENST00000603054 253 ntBASIC15.86■□□□□ 0.13
PKNOX1P55347 AL009183.1-201ENST00000603760 355 ntBASIC15.86■□□□□ 0.13
PKNOX1P55347 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC15.86■□□□□ 0.13
PKNOX1P55347 AC116407.3-201ENST00000623905 1129 ntBASIC15.86■□□□□ 0.13
PKNOX1P55347 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC15.86■□□□□ 0.13
PKNOX1P55347 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
PKNOX1P55347 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PKNOX1P55347 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PKNOX1P55347 AC008677.1-201ENST00000519230 1561 ntBASIC15.86■□□□□ 0.13
PKNOX1P55347 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC15.86■□□□□ 0.13
PKNOX1P55347 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC15.86■□□□□ 0.13
PKNOX1P55347 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC15.86■□□□□ 0.13
PKNOX1P55347 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
PKNOX1P55347 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC15.86■□□□□ 0.13
PKNOX1P55347 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PKNOX1P55347 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PKNOX1P55347 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
PKNOX1P55347 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PKNOX1P55347 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PKNOX1P55347 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PKNOX1P55347 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC15.85■□□□□ 0.13
PKNOX1P55347 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PKNOX1P55347 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC15.85■□□□□ 0.13
PKNOX1P55347 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.85■□□□□ 0.13
PKNOX1P55347 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PKNOX1P55347 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PKNOX1P55347 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC15.85■□□□□ 0.13
PKNOX1P55347 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
PKNOX1P55347 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
PKNOX1P55347 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PKNOX1P55347 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PKNOX1P55347 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PKNOX1P55347 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PKNOX1P55347 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PKNOX1P55347 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.85■□□□□ 0.13
PKNOX1P55347 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
PKNOX1P55347 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
PKNOX1P55347 CSF3-203ENST00000394148 622 ntTSL 3 BASIC15.85■□□□□ 0.13
PKNOX1P55347 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PKNOX1P55347 CFL1-202ENST00000524553 860 ntTSL 2 BASIC15.85■□□□□ 0.13
PKNOX1P55347 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
PKNOX1P55347 IRF5-214ENST00000613821 595 ntTSL 5 BASIC15.85■□□□□ 0.13
PKNOX1P55347 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC15.85■□□□□ 0.13
PKNOX1P55347 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC15.85■□□□□ 0.13
PKNOX1P55347 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PKNOX1P55347 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PKNOX1P55347 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
PKNOX1P55347 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
PKNOX1P55347 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC15.85■□□□□ 0.13
PKNOX1P55347 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.85■□□□□ 0.13
PKNOX1P55347 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PKNOX1P55347 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
PKNOX1P55347 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PKNOX1P55347 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PKNOX1P55347 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PKNOX1P55347 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC15.84■□□□□ 0.13
PKNOX1P55347 TPO-203ENST00000346956 2923 ntTSL 5 BASIC15.84■□□□□ 0.13
PKNOX1P55347 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
PKNOX1P55347 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms