Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
EPHB3P54753 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
EPHB3P54753 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
EPHB3P54753 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.73■□□□□ 0.27
EPHB3P54753 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
EPHB3P54753 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16.73■□□□□ 0.27
EPHB3P54753 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
EPHB3P54753 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC16.73■□□□□ 0.27
EPHB3P54753 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.73■□□□□ 0.27
EPHB3P54753 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.73■□□□□ 0.27
EPHB3P54753 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
EPHB3P54753 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
EPHB3P54753 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC16.73■□□□□ 0.27
EPHB3P54753 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.73■□□□□ 0.27
EPHB3P54753 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.73■□□□□ 0.27
EPHB3P54753 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
EPHB3P54753 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC16.73■□□□□ 0.27
EPHB3P54753 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
EPHB3P54753 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC16.73■□□□□ 0.27
EPHB3P54753 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.73■□□□□ 0.27
EPHB3P54753 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
EPHB3P54753 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
EPHB3P54753 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
EPHB3P54753 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
EPHB3P54753 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
EPHB3P54753 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC16.73■□□□□ 0.27
EPHB3P54753 ARSEP1-201ENST00000420443 635 ntBASIC16.73■□□□□ 0.27
EPHB3P54753 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC16.73■□□□□ 0.27
EPHB3P54753 TARDBPP1-201ENST00000442013 1203 ntBASIC16.73■□□□□ 0.27
EPHB3P54753 TTTY23B-201ENST00000442790 549 ntBASIC16.73■□□□□ 0.27
EPHB3P54753 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC16.73■□□□□ 0.27
EPHB3P54753 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC16.73■□□□□ 0.27
EPHB3P54753 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
EPHB3P54753 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC16.73■□□□□ 0.27
EPHB3P54753 AC036164.1-201ENST00000570544 333 ntBASIC16.73■□□□□ 0.27
EPHB3P54753 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC16.73■□□□□ 0.27
EPHB3P54753 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC16.73■□□□□ 0.27
EPHB3P54753 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
EPHB3P54753 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
EPHB3P54753 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
EPHB3P54753 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
EPHB3P54753 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
EPHB3P54753 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
EPHB3P54753 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
EPHB3P54753 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.73■□□□□ 0.27
EPHB3P54753 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
EPHB3P54753 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
EPHB3P54753 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC16.73■□□□□ 0.27
EPHB3P54753 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
EPHB3P54753 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
EPHB3P54753 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
EPHB3P54753 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC16.73■□□□□ 0.27
EPHB3P54753 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
EPHB3P54753 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
EPHB3P54753 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
EPHB3P54753 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
EPHB3P54753 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
EPHB3P54753 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
EPHB3P54753 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
EPHB3P54753 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
EPHB3P54753 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
EPHB3P54753 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
EPHB3P54753 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
EPHB3P54753 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.72■□□□□ 0.27
EPHB3P54753 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
EPHB3P54753 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.72■□□□□ 0.27
EPHB3P54753 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
EPHB3P54753 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
EPHB3P54753 NSL1-201ENST00000366976 722 ntTSL 2 BASIC16.72■□□□□ 0.27
EPHB3P54753 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
EPHB3P54753 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC16.72■□□□□ 0.27
EPHB3P54753 RPL13P2-201ENST00000440687 659 ntBASIC16.72■□□□□ 0.27
EPHB3P54753 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC16.72■□□□□ 0.27
EPHB3P54753 RN7SL399P-201ENST00000471648 279 ntBASIC16.72■□□□□ 0.27
EPHB3P54753 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC16.72■□□□□ 0.27
EPHB3P54753 IGHV3-71-201ENST00000523324 359 ntBASIC16.72■□□□□ 0.27
EPHB3P54753 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC16.72■□□□□ 0.27
EPHB3P54753 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
EPHB3P54753 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC16.72■□□□□ 0.27
EPHB3P54753 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC16.72■□□□□ 0.27
EPHB3P54753 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC16.72■□□□□ 0.27
EPHB3P54753 WFDC1-204ENST00000613603 549 ntBASIC16.72■□□□□ 0.27
EPHB3P54753 MIR8072-201ENST00000614241 80 ntBASIC16.72■□□□□ 0.27
EPHB3P54753 AL162274.1-201ENST00000617191 1098 ntBASIC16.72■□□□□ 0.27
EPHB3P54753 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
EPHB3P54753 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC16.72■□□□□ 0.27
EPHB3P54753 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC16.72■□□□□ 0.27
EPHB3P54753 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC16.72■□□□□ 0.27
EPHB3P54753 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
EPHB3P54753 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.72■□□□□ 0.27
EPHB3P54753 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
EPHB3P54753 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
EPHB3P54753 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.72■□□□□ 0.27
EPHB3P54753 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
EPHB3P54753 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
EPHB3P54753 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC16.72■□□□□ 0.27
EPHB3P54753 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
EPHB3P54753 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC16.72■□□□□ 0.27
EPHB3P54753 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
EPHB3P54753 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms