Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AC063926.3-201ENST00000624734 5658 ntBASIC15.69■□□□□ 0.1
HNF4AP41235 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HNF4AP41235 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
HNF4AP41235 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
HNF4AP41235 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HNF4AP41235 AC010491.1-201ENST00000563101 2797 ntBASIC15.69■□□□□ 0.1
HNF4AP41235 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HNF4AP41235 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HNF4AP41235 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.68■□□□□ 0.1
HNF4AP41235 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
HNF4AP41235 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
HNF4AP41235 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HNF4AP41235 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HNF4AP41235 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HNF4AP41235 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC15.68■□□□□ 0.1
HNF4AP41235 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.68■□□□□ 0.1
HNF4AP41235 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
HNF4AP41235 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HNF4AP41235 AC008677.1-201ENST00000519230 1561 ntBASIC15.68■□□□□ 0.1
HNF4AP41235 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
HNF4AP41235 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HNF4AP41235 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HNF4AP41235 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HNF4AP41235 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HNF4AP41235 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC15.68■□□□□ 0.1
HNF4AP41235 ACTG1P14-201ENST00000446382 1122 ntBASIC15.68■□□□□ 0.1
HNF4AP41235 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC15.68■□□□□ 0.1
HNF4AP41235 AC105233.2-201ENST00000523697 349 ntBASIC15.68■□□□□ 0.1
HNF4AP41235 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC15.68■□□□□ 0.1
HNF4AP41235 AF228730.5-201ENST00000530288 346 ntBASIC15.68■□□□□ 0.1
HNF4AP41235 PUS1-205ENST00000535067 838 ntTSL 3 BASIC15.68■□□□□ 0.1
HNF4AP41235 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC15.68■□□□□ 0.1
HNF4AP41235 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HNF4AP41235 AC055717.3-201ENST00000622967 595 ntBASIC15.68■□□□□ 0.1
HNF4AP41235 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HNF4AP41235 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC15.68■□□□□ 0.1
HNF4AP41235 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HNF4AP41235 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HNF4AP41235 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.68■□□□□ 0.1
HNF4AP41235 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HNF4AP41235 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HNF4AP41235 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HNF4AP41235 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC15.68■□□□□ 0.1
HNF4AP41235 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HNF4AP41235 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HNF4AP41235 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HNF4AP41235 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC15.68■□□□□ 0.1
HNF4AP41235 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.68■□□□□ 0.1
HNF4AP41235 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HNF4AP41235 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HNF4AP41235 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
HNF4AP41235 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
HNF4AP41235 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
HNF4AP41235 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
HNF4AP41235 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HNF4AP41235 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
HNF4AP41235 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
HNF4AP41235 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HNF4AP41235 ACE-203ENST00000413513 2237 ntTSL 2 BASIC15.67■□□□□ 0.1
HNF4AP41235 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HNF4AP41235 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC15.67■□□□□ 0.1
HNF4AP41235 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC15.67■□□□□ 0.1
HNF4AP41235 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC15.67■□□□□ 0.1
HNF4AP41235 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC15.67■□□□□ 0.1
HNF4AP41235 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC15.67■□□□□ 0.1
HNF4AP41235 AC211486.1-202ENST00000416371 468 ntBASIC15.67■□□□□ 0.1
HNF4AP41235 RPS8P6-201ENST00000426177 609 ntBASIC15.67■□□□□ 0.1
HNF4AP41235 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC15.67■□□□□ 0.1
HNF4AP41235 ADH5P3-201ENST00000433842 1137 ntBASIC15.67■□□□□ 0.1
HNF4AP41235 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HNF4AP41235 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC15.67■□□□□ 0.1
HNF4AP41235 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC15.67■□□□□ 0.1
HNF4AP41235 RN7SL589P-201ENST00000481268 310 ntBASIC15.67■□□□□ 0.1
HNF4AP41235 AC098859.1-201ENST00000502915 1238 ntBASIC15.67■□□□□ 0.1
HNF4AP41235 AC211476.1-201ENST00000503899 468 ntBASIC15.67■□□□□ 0.1
HNF4AP41235 AC079140.1-201ENST00000508039 487 ntBASIC15.67■□□□□ 0.1
HNF4AP41235 GATB-205ENST00000508611 605 ntTSL 2 BASIC15.67■□□□□ 0.1
HNF4AP41235 CCND1-203ENST00000536559 553 ntTSL 3 BASIC15.67■□□□□ 0.1
HNF4AP41235 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC15.67■□□□□ 0.1
HNF4AP41235 AC243562.1-201ENST00000560672 389 ntBASIC15.67■□□□□ 0.1
HNF4AP41235 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC15.67■□□□□ 0.1
HNF4AP41235 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC15.67■□□□□ 0.1
HNF4AP41235 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC15.67■□□□□ 0.1
HNF4AP41235 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
HNF4AP41235 AC023511.2-201ENST00000618803 211 ntBASIC15.67■□□□□ 0.1
HNF4AP41235 AC008267.7-201ENST00000624570 1194 ntBASIC15.67■□□□□ 0.1
HNF4AP41235 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC15.67■□□□□ 0.1
HNF4AP41235 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HNF4AP41235 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC15.67■□□□□ 0.1
HNF4AP41235 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HNF4AP41235 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
HNF4AP41235 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HNF4AP41235 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC15.67■□□□□ 0.1
HNF4AP41235 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HNF4AP41235 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
HNF4AP41235 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.67■□□□□ 0.1
HNF4AP41235 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.67■□□□□ 0.1
HNF4AP41235 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC15.67■□□□□ 0.1
HNF4AP41235 AC068587.6-202ENST00000641839 5619 ntBASIC15.66■□□□□ 0.1
HNF4AP41235 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms