Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHMT2P34897 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHMT2P34897 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHMT2P34897 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC15.81■□□□□ 0.12
SHMT2P34897 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHMT2P34897 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHMT2P34897 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC15.81■□□□□ 0.12
SHMT2P34897 STK24-203ENST00000397517 4578 ntTSL 2 BASIC15.81■□□□□ 0.12
SHMT2P34897 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHMT2P34897 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHMT2P34897 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SHMT2P34897 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC15.81■□□□□ 0.12
SHMT2P34897 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHMT2P34897 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC15.81■□□□□ 0.12
SHMT2P34897 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHMT2P34897 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC15.81■□□□□ 0.12
SHMT2P34897 SLBP-205ENST00000488267 987 ntTSL 2 BASIC15.81■□□□□ 0.12
SHMT2P34897 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC15.81■□□□□ 0.12
SHMT2P34897 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC15.81■□□□□ 0.12
SHMT2P34897 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHMT2P34897 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
SHMT2P34897 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SHMT2P34897 VPS29-207ENST00000549970 818 ntTSL 3 BASIC15.81■□□□□ 0.12
SHMT2P34897 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC15.81■□□□□ 0.12
SHMT2P34897 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC15.81■□□□□ 0.12
SHMT2P34897 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC15.81■□□□□ 0.12
SHMT2P34897 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC15.81■□□□□ 0.12
SHMT2P34897 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHMT2P34897 AC018529.1-201ENST00000613063 361 ntBASIC15.81■□□□□ 0.12
SHMT2P34897 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHMT2P34897 Z92544.3-201ENST00000624747 417 ntBASIC15.81■□□□□ 0.12
SHMT2P34897 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC15.81■□□□□ 0.12
SHMT2P34897 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC15.81■□□□□ 0.12
SHMT2P34897 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SHMT2P34897 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHMT2P34897 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SHMT2P34897 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC15.81■□□□□ 0.12
SHMT2P34897 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHMT2P34897 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.8■□□□□ 0.12
SHMT2P34897 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC15.8■□□□□ 0.12
SHMT2P34897 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC15.8■□□□□ 0.12
SHMT2P34897 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
SHMT2P34897 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
SHMT2P34897 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
SHMT2P34897 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHMT2P34897 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC15.8■□□□□ 0.12
SHMT2P34897 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC15.8■□□□□ 0.12
SHMT2P34897 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHMT2P34897 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SHMT2P34897 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC15.8■□□□□ 0.12
SHMT2P34897 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SHMT2P34897 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHMT2P34897 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC15.8■□□□□ 0.12
SHMT2P34897 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHMT2P34897 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHMT2P34897 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHMT2P34897 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHMT2P34897 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SHMT2P34897 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC15.8■□□□□ 0.12
SHMT2P34897 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SHMT2P34897 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC15.8■□□□□ 0.12
SHMT2P34897 AL353705.2-201ENST00000428243 662 ntBASIC15.8■□□□□ 0.12
SHMT2P34897 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SHMT2P34897 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHMT2P34897 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHMT2P34897 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC15.8■□□□□ 0.12
SHMT2P34897 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHMT2P34897 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC15.8■□□□□ 0.12
SHMT2P34897 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SHMT2P34897 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC15.8■□□□□ 0.12
SHMT2P34897 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SHMT2P34897 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC15.8■□□□□ 0.12
SHMT2P34897 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC15.8■□□□□ 0.12
SHMT2P34897 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHMT2P34897 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHMT2P34897 FES-204ENST00000414248 2327 ntTSL 2 BASIC15.8■□□□□ 0.12
SHMT2P34897 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHMT2P34897 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHMT2P34897 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHMT2P34897 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SHMT2P34897 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SHMT2P34897 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHMT2P34897 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC15.8■□□□□ 0.12
SHMT2P34897 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
SHMT2P34897 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC15.8■□□□□ 0.12
SHMT2P34897 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC15.8■□□□□ 0.12
SHMT2P34897 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC15.8■□□□□ 0.12
SHMT2P34897 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
SHMT2P34897 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHMT2P34897 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHMT2P34897 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SHMT2P34897 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SHMT2P34897 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SHMT2P34897 MTHFR-217ENST00000641820 1569 ntBASIC15.79■□□□□ 0.12
SHMT2P34897 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SHMT2P34897 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC15.79■□□□□ 0.12
SHMT2P34897 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SHMT2P34897 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SHMT2P34897 AC126177.1-201ENST00000547829 2218 ntBASIC15.79■□□□□ 0.12
SHMT2P34897 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms