Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC18.06■□□□□ 0.48
CIITAP33076 WDR53-203ENST00000429115 683 ntTSL 2 BASIC18.06■□□□□ 0.48
CIITAP33076 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC18.06■□□□□ 0.48
CIITAP33076 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC18.06■□□□□ 0.48
CIITAP33076 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CIITAP33076 RAB35-202ENST00000534951 939 ntTSL 2 BASIC18.06■□□□□ 0.48
CIITAP33076 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC18.06■□□□□ 0.48
CIITAP33076 MIR4745-201ENST00000577608 62 ntBASIC18.06■□□□□ 0.48
CIITAP33076 AC092364.2-202ENST00000597012 1073 ntBASIC18.06■□□□□ 0.48
CIITAP33076 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CIITAP33076 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CIITAP33076 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CIITAP33076 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
CIITAP33076 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
CIITAP33076 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CIITAP33076 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CIITAP33076 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
CIITAP33076 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CIITAP33076 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CIITAP33076 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CIITAP33076 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC18.05■□□□□ 0.48
CIITAP33076 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC18.05■□□□□ 0.48
CIITAP33076 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CIITAP33076 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC18.05■□□□□ 0.48
CIITAP33076 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CIITAP33076 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC18.05■□□□□ 0.48
CIITAP33076 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC18.05■□□□□ 0.48
CIITAP33076 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
CIITAP33076 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CIITAP33076 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC18.05■□□□□ 0.48
CIITAP33076 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC18.05■□□□□ 0.48
CIITAP33076 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
CIITAP33076 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CIITAP33076 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC18.05■□□□□ 0.48
CIITAP33076 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC18.05■□□□□ 0.48
CIITAP33076 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
CIITAP33076 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CIITAP33076 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CIITAP33076 AC074338.1-201ENST00000416825 156 ntBASIC18.05■□□□□ 0.48
CIITAP33076 TARDBPP1-201ENST00000442013 1203 ntBASIC18.05■□□□□ 0.48
CIITAP33076 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC18.05■□□□□ 0.48
CIITAP33076 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC18.05■□□□□ 0.48
CIITAP33076 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CIITAP33076 AC074044.1-201ENST00000609673 707 ntBASIC18.05■□□□□ 0.48
CIITAP33076 5S_rRNA.22-201ENST00000614916 106 ntBASIC18.05■□□□□ 0.48
CIITAP33076 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC18.05■□□□□ 0.48
CIITAP33076 AL109936.8-201ENST00000641772 604 ntBASIC18.05■□□□□ 0.48
CIITAP33076 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
CIITAP33076 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC18.05■□□□□ 0.48
CIITAP33076 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CIITAP33076 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC18.05■□□□□ 0.48
CIITAP33076 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CIITAP33076 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
CIITAP33076 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CIITAP33076 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CIITAP33076 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CIITAP33076 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CIITAP33076 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CIITAP33076 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC18.04■□□□□ 0.48
CIITAP33076 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
CIITAP33076 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC18.04■□□□□ 0.48
CIITAP33076 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC18.04■□□□□ 0.48
CIITAP33076 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CIITAP33076 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
CIITAP33076 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CIITAP33076 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
CIITAP33076 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
CIITAP33076 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CIITAP33076 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CIITAP33076 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC18.04■□□□□ 0.48
CIITAP33076 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
CIITAP33076 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC18.04■□□□□ 0.48
CIITAP33076 AC002472.2-201ENST00000442739 958 ntBASIC18.04■□□□□ 0.48
CIITAP33076 NME4-207ENST00000450036 985 ntTSL 3 BASIC18.04■□□□□ 0.48
CIITAP33076 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC18.04■□□□□ 0.48
CIITAP33076 TMPRSS11CP-201ENST00000453277 683 ntBASIC18.04■□□□□ 0.48
CIITAP33076 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC18.04■□□□□ 0.48
CIITAP33076 STOM-203ENST00000538954 1257 ntTSL 5 BASIC18.04■□□□□ 0.48
CIITAP33076 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CIITAP33076 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC18.04■□□□□ 0.48
CIITAP33076 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC18.04■□□□□ 0.48
CIITAP33076 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC18.04■□□□□ 0.48
CIITAP33076 AC009118.2-201ENST00000613275 655 ntBASIC18.04■□□□□ 0.48
CIITAP33076 AC004461.2-201ENST00000629517 803 ntBASIC18.04■□□□□ 0.48
CIITAP33076 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.04■□□□□ 0.48
CIITAP33076 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CIITAP33076 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC18.04■□□□□ 0.48
CIITAP33076 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC18.04■□□□□ 0.48
CIITAP33076 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CIITAP33076 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC18.04■□□□□ 0.48
CIITAP33076 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CIITAP33076 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC18.04■□□□□ 0.48
CIITAP33076 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CIITAP33076 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CIITAP33076 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CIITAP33076 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CIITAP33076 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC18.04■□□□□ 0.48
CIITAP33076 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC18.04■□□□□ 0.48
CIITAP33076 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CIITAP33076 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms