Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCA1P28370 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SMARCA1P28370 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCA1P28370 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC18.38■□□□□ 0.53
SMARCA1P28370 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCA1P28370 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
SMARCA1P28370 SUPT20HL2-201ENST00000486479 2409 ntBASIC18.38■□□□□ 0.53
SMARCA1P28370 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMARCA1P28370 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMARCA1P28370 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMARCA1P28370 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC18.37■□□□□ 0.53
SMARCA1P28370 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
SMARCA1P28370 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMARCA1P28370 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMARCA1P28370 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMARCA1P28370 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
SMARCA1P28370 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
SMARCA1P28370 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMARCA1P28370 TOMM22P5-201ENST00000416399 439 ntBASIC18.37■□□□□ 0.53
SMARCA1P28370 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC18.37■□□□□ 0.53
SMARCA1P28370 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC18.37■□□□□ 0.53
SMARCA1P28370 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC18.37■□□□□ 0.53
SMARCA1P28370 MIR4745-201ENST00000577608 62 ntBASIC18.37■□□□□ 0.53
SMARCA1P28370 RN7SL204P-201ENST00000582831 262 ntBASIC18.37■□□□□ 0.53
SMARCA1P28370 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC18.37■□□□□ 0.53
SMARCA1P28370 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC18.37■□□□□ 0.53
SMARCA1P28370 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMARCA1P28370 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
SMARCA1P28370 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC18.37■□□□□ 0.53
SMARCA1P28370 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SMARCA1P28370 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
SMARCA1P28370 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC18.37■□□□□ 0.53
SMARCA1P28370 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC18.37■□□□□ 0.53
SMARCA1P28370 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SMARCA1P28370 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC18.37■□□□□ 0.53
SMARCA1P28370 AL365203.3-201ENST00000609742 2057 ntBASIC18.37■□□□□ 0.53
SMARCA1P28370 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMARCA1P28370 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMARCA1P28370 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMARCA1P28370 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMARCA1P28370 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SMARCA1P28370 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC18.36■□□□□ 0.53
SMARCA1P28370 MIR661-201ENST00000384842 89 ntBASIC18.36■□□□□ 0.53
SMARCA1P28370 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC18.36■□□□□ 0.53
SMARCA1P28370 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMARCA1P28370 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMARCA1P28370 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
SMARCA1P28370 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC18.36■□□□□ 0.53
SMARCA1P28370 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC18.36■□□□□ 0.53
SMARCA1P28370 USP40-206ENST00000443711 628 ntTSL 2 BASIC18.36■□□□□ 0.53
SMARCA1P28370 SPTLC1P1-201ENST00000447199 261 ntBASIC18.36■□□□□ 0.53
SMARCA1P28370 RHOA-206ENST00000454011 889 ntTSL 2 BASIC18.36■□□□□ 0.53
SMARCA1P28370 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SMARCA1P28370 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC18.36■□□□□ 0.53
SMARCA1P28370 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC18.36■□□□□ 0.53
SMARCA1P28370 SRD5A3P1-201ENST00000603021 949 ntBASIC18.36■□□□□ 0.53
SMARCA1P28370 AC008761.3-201ENST00000624803 892 ntBASIC18.36■□□□□ 0.53
SMARCA1P28370 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMARCA1P28370 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMARCA1P28370 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC18.35■□□□□ 0.53
SMARCA1P28370 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMARCA1P28370 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMARCA1P28370 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC18.35■□□□□ 0.53
SMARCA1P28370 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC18.35■□□□□ 0.53
SMARCA1P28370 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMARCA1P28370 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMARCA1P28370 AL607033.1-201ENST00000623900 1599 ntBASIC18.35■□□□□ 0.53
SMARCA1P28370 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SMARCA1P28370 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SMARCA1P28370 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
SMARCA1P28370 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMARCA1P28370 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC18.35■□□□□ 0.53
SMARCA1P28370 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
SMARCA1P28370 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC18.35■□□□□ 0.53
SMARCA1P28370 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
SMARCA1P28370 AC002472.2-201ENST00000442739 958 ntBASIC18.35■□□□□ 0.53
SMARCA1P28370 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SMARCA1P28370 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC18.35■□□□□ 0.53
SMARCA1P28370 STOM-203ENST00000538954 1257 ntTSL 5 BASIC18.35■□□□□ 0.53
SMARCA1P28370 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
SMARCA1P28370 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
SMARCA1P28370 LINC02560-201ENST00000596379 459 ntBASIC18.35■□□□□ 0.53
SMARCA1P28370 RNA5-8SN1-201ENST00000610460 153 ntBASIC18.35■□□□□ 0.53
SMARCA1P28370 RNA5-8SN5-202ENST00000612463 153 ntBASIC18.35■□□□□ 0.53
SMARCA1P28370 RNA5-8SN4-201ENST00000613359 153 ntBASIC18.35■□□□□ 0.53
SMARCA1P28370 RNA5-8SN5-201ENST00000619471 153 ntBASIC18.35■□□□□ 0.53
SMARCA1P28370 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SMARCA1P28370 AC018892.3-201ENST00000623986 2499 ntBASIC18.35■□□□□ 0.53
SMARCA1P28370 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMARCA1P28370 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMARCA1P28370 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC18.35■□□□□ 0.53
SMARCA1P28370 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMARCA1P28370 CES3-203ENST00000543856 3178 ntTSL 2 BASIC18.35■□□□□ 0.53
SMARCA1P28370 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC18.35■□□□□ 0.53
SMARCA1P28370 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC18.35■□□□□ 0.53
SMARCA1P28370 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SMARCA1P28370 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMARCA1P28370 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC18.35■□□□□ 0.53
SMARCA1P28370 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC18.34■□□□□ 0.53
SMARCA1P28370 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms