Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 AC024267.1-201ENST00000582320 895 ntBASIC15.5■□□□□ 0.07
SEMA3DO95025 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC15.5■□□□□ 0.07
SEMA3DO95025 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC15.5■□□□□ 0.07
SEMA3DO95025 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC15.5■□□□□ 0.07
SEMA3DO95025 SPDYE10P-202ENST00000612005 668 ntBASIC15.5■□□□□ 0.07
SEMA3DO95025 SPDYE8P-202ENST00000612377 668 ntBASIC15.5■□□□□ 0.07
SEMA3DO95025 SPTSSB-204ENST00000617024 1292 ntBASIC15.5■□□□□ 0.07
SEMA3DO95025 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC15.5■□□□□ 0.07
SEMA3DO95025 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC15.5■□□□□ 0.07
SEMA3DO95025 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SEMA3DO95025 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SEMA3DO95025 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
SEMA3DO95025 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC15.5■□□□□ 0.07
SEMA3DO95025 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.5■□□□□ 0.07
SEMA3DO95025 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SEMA3DO95025 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SEMA3DO95025 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SEMA3DO95025 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC15.5■□□□□ 0.07
SEMA3DO95025 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC15.5■□□□□ 0.07
SEMA3DO95025 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
SEMA3DO95025 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
SEMA3DO95025 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SEMA3DO95025 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC15.5■□□□□ 0.07
SEMA3DO95025 AC112504.1-201ENST00000623415 1841 ntBASIC15.5■□□□□ 0.07
SEMA3DO95025 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SEMA3DO95025 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
SEMA3DO95025 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SEMA3DO95025 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC15.49■□□□□ 0.07
SEMA3DO95025 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SEMA3DO95025 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SEMA3DO95025 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC15.49■□□□□ 0.07
SEMA3DO95025 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC15.49■□□□□ 0.07
SEMA3DO95025 GOLGA2P9-201ENST00000596977 1937 ntBASIC15.49■□□□□ 0.07
SEMA3DO95025 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SEMA3DO95025 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC15.49■□□□□ 0.07
SEMA3DO95025 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC15.49■□□□□ 0.07
SEMA3DO95025 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SEMA3DO95025 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC15.49■□□□□ 0.07
SEMA3DO95025 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SEMA3DO95025 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SEMA3DO95025 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC15.49■□□□□ 0.07
SEMA3DO95025 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SEMA3DO95025 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
SEMA3DO95025 HTR5BP-201ENST00000430851 1154 ntBASIC15.49■□□□□ 0.07
SEMA3DO95025 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC15.49■□□□□ 0.07
SEMA3DO95025 GATB-205ENST00000508611 605 ntTSL 2 BASIC15.49■□□□□ 0.07
SEMA3DO95025 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC15.49■□□□□ 0.07
SEMA3DO95025 RNF34-208ENST00000555076 593 ntTSL 3 BASIC15.49■□□□□ 0.07
SEMA3DO95025 AC243562.1-201ENST00000560672 389 ntBASIC15.49■□□□□ 0.07
SEMA3DO95025 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC15.49■□□□□ 0.07
SEMA3DO95025 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC15.49■□□□□ 0.07
SEMA3DO95025 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC15.49■□□□□ 0.07
SEMA3DO95025 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
SEMA3DO95025 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SEMA3DO95025 LINC02228-204ENST00000642115 2962 ntBASIC15.49■□□□□ 0.07
SEMA3DO95025 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
SEMA3DO95025 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC15.49■□□□□ 0.07
SEMA3DO95025 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC15.49■□□□□ 0.07
SEMA3DO95025 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC15.49■□□□□ 0.07
SEMA3DO95025 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
SEMA3DO95025 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SEMA3DO95025 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC15.49■□□□□ 0.07
SEMA3DO95025 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC15.49■□□□□ 0.07
SEMA3DO95025 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SEMA3DO95025 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
SEMA3DO95025 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
SEMA3DO95025 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SEMA3DO95025 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC15.48■□□□□ 0.07
SEMA3DO95025 FOXO1B-201ENST00000504678 1527 ntBASIC15.48■□□□□ 0.07
SEMA3DO95025 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
SEMA3DO95025 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC15.48■□□□□ 0.07
SEMA3DO95025 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SEMA3DO95025 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SEMA3DO95025 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC15.48■□□□□ 0.07
SEMA3DO95025 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
SEMA3DO95025 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SEMA3DO95025 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SEMA3DO95025 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SEMA3DO95025 AP001282.1-201ENST00000531301 1499 ntBASIC15.48■□□□□ 0.07
SEMA3DO95025 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
SEMA3DO95025 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SEMA3DO95025 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SEMA3DO95025 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SEMA3DO95025 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC15.48■□□□□ 0.07
SEMA3DO95025 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
SEMA3DO95025 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SEMA3DO95025 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
SEMA3DO95025 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC15.48■□□□□ 0.07
SEMA3DO95025 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SEMA3DO95025 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC15.48■□□□□ 0.07
SEMA3DO95025 PP14571-201ENST00000404327 934 ntTSL 2 BASIC15.48■□□□□ 0.07
SEMA3DO95025 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC15.48■□□□□ 0.07
SEMA3DO95025 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
SEMA3DO95025 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC15.48■□□□□ 0.07
SEMA3DO95025 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC15.48■□□□□ 0.07
SEMA3DO95025 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC15.48■□□□□ 0.07
SEMA3DO95025 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC15.48■□□□□ 0.07
SEMA3DO95025 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC15.48■□□□□ 0.07
SEMA3DO95025 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC15.48■□□□□ 0.07
SEMA3DO95025 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms