Protein–RNA interactions for Protein: O43353

RIPK2, Receptor-interacting serine/threonine-protein kinase 2, humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK2O43353 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
RIPK2O43353 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RIPK2O43353 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.22
RIPK2O43353 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
RIPK2O43353 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
RIPK2O43353 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
RIPK2O43353 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RIPK2O43353 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
RIPK2O43353 AGAP7P-201ENST00000582299 2062 ntBASIC16.39■□□□□ 0.21
RIPK2O43353 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RIPK2O43353 AGAP14-201ENST00000624701 2060 ntBASIC16.39■□□□□ 0.21
RIPK2O43353 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RIPK2O43353 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
RIPK2O43353 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
RIPK2O43353 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
RIPK2O43353 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RIPK2O43353 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC16.39■□□□□ 0.21
RIPK2O43353 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RIPK2O43353 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC16.39■□□□□ 0.21
RIPK2O43353 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
RIPK2O43353 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RIPK2O43353 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RIPK2O43353 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RIPK2O43353 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC16.39■□□□□ 0.21
RIPK2O43353 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC16.39■□□□□ 0.21
RIPK2O43353 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RIPK2O43353 FAM185BP-201ENST00000443595 716 ntBASIC16.39■□□□□ 0.21
RIPK2O43353 KRT18P31-201ENST00000506277 1292 ntBASIC16.39■□□□□ 0.21
RIPK2O43353 KRT18P21-201ENST00000515767 1272 ntBASIC16.39■□□□□ 0.21
RIPK2O43353 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC16.39■□□□□ 0.21
RIPK2O43353 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RIPK2O43353 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC16.39■□□□□ 0.21
RIPK2O43353 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.39■□□□□ 0.21
RIPK2O43353 REXO1L6P-202ENST00000619970 1078 ntBASIC16.39■□□□□ 0.21
RIPK2O43353 AL358472.4-201ENST00000633140 710 ntBASIC16.39■□□□□ 0.21
RIPK2O43353 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.39■□□□□ 0.21
RIPK2O43353 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RIPK2O43353 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC16.39■□□□□ 0.21
RIPK2O43353 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.39■□□□□ 0.21
RIPK2O43353 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RIPK2O43353 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RIPK2O43353 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
RIPK2O43353 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
RIPK2O43353 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
RIPK2O43353 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC16.38■□□□□ 0.21
RIPK2O43353 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
RIPK2O43353 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RIPK2O43353 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.38■□□□□ 0.21
RIPK2O43353 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RIPK2O43353 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RIPK2O43353 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC16.38■□□□□ 0.21
RIPK2O43353 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
RIPK2O43353 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RIPK2O43353 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RIPK2O43353 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RIPK2O43353 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
RIPK2O43353 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
RIPK2O43353 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.38■□□□□ 0.21
RIPK2O43353 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.38■□□□□ 0.21
RIPK2O43353 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC16.38■□□□□ 0.21
RIPK2O43353 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
RIPK2O43353 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.38■□□□□ 0.21
RIPK2O43353 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.38■□□□□ 0.21
RIPK2O43353 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RIPK2O43353 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC16.38■□□□□ 0.21
RIPK2O43353 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.38■□□□□ 0.21
RIPK2O43353 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
RIPK2O43353 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
RIPK2O43353 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
RIPK2O43353 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
RIPK2O43353 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.38■□□□□ 0.21
RIPK2O43353 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
RIPK2O43353 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RIPK2O43353 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.38■□□□□ 0.21
RIPK2O43353 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RIPK2O43353 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC16.38■□□□□ 0.21
RIPK2O43353 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
RIPK2O43353 TKT-202ENST00000423516 2075 ntTSL 2 BASIC16.38■□□□□ 0.21
RIPK2O43353 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC16.38■□□□□ 0.21
RIPK2O43353 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC16.37■□□□□ 0.21
RIPK2O43353 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RIPK2O43353 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
RIPK2O43353 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
RIPK2O43353 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
RIPK2O43353 AC063926.3-201ENST00000624734 5658 ntBASIC16.37■□□□□ 0.21
RIPK2O43353 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
RIPK2O43353 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
RIPK2O43353 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
RIPK2O43353 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
RIPK2O43353 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
RIPK2O43353 ILF3-AS1-201ENST00000591501 1983 ntBASIC16.37■□□□□ 0.21
RIPK2O43353 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC16.37■□□□□ 0.21
RIPK2O43353 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
RIPK2O43353 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
RIPK2O43353 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
RIPK2O43353 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC16.37■□□□□ 0.21
RIPK2O43353 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RIPK2O43353 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RIPK2O43353 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RIPK2O43353 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms