Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
HMGB3O15347 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC13.04□□□□□ -0.32
HMGB3O15347 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC13.04□□□□□ -0.32
HMGB3O15347 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC13.04□□□□□ -0.32
HMGB3O15347 COX11P1-201ENST00000489116 835 ntBASIC13.04□□□□□ -0.32
HMGB3O15347 GUSBP12-201ENST00000513727 720 ntBASIC13.04□□□□□ -0.32
HMGB3O15347 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC13.04□□□□□ -0.32
HMGB3O15347 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC13.04□□□□□ -0.32
HMGB3O15347 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC13.04□□□□□ -0.32
HMGB3O15347 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC13.04□□□□□ -0.32
HMGB3O15347 AC011558.1-201ENST00000623459 338 ntBASIC13.04□□□□□ -0.32
HMGB3O15347 AL031432.5-201ENST00000641059 760 ntBASIC13.04□□□□□ -0.32
HMGB3O15347 AL139011.1-202ENST00000642063 584 ntBASIC13.04□□□□□ -0.32
HMGB3O15347 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC13.04□□□□□ -0.32
HMGB3O15347 ATG7-201ENST00000354449 4959 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC13.04□□□□□ -0.32
HMGB3O15347 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC13.04□□□□□ -0.32
HMGB3O15347 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC13.04□□□□□ -0.32
HMGB3O15347 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
HMGB3O15347 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 AP002360.1-203ENST00000321844 5363 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 SNHG14-212ENST00000549804 7844 ntTSL 5 BASIC13.04□□□□□ -0.32
HMGB3O15347 PLEC-208ENST00000436759 14787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 TBL1X-206ENST00000424279 5451 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
HMGB3O15347 TGM2-201ENST00000361475 5070 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
HMGB3O15347 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC13.04□□□□□ -0.32
HMGB3O15347 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC13.04□□□□□ -0.32
HMGB3O15347 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC13.04□□□□□ -0.32
HMGB3O15347 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC13.04□□□□□ -0.32
HMGB3O15347 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HMGB3O15347 AC138035.3-201ENST00000622706 2791 ntBASIC13.03□□□□□ -0.32
HMGB3O15347 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
HMGB3O15347 ARAP3-207ENST00000626478 4928 ntTSL 5 BASIC13.03□□□□□ -0.32
HMGB3O15347 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
HMGB3O15347 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC13.03□□□□□ -0.32
HMGB3O15347 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
HMGB3O15347 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HMGB3O15347 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HMGB3O15347 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
HMGB3O15347 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
HMGB3O15347 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
HMGB3O15347 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HMGB3O15347 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
HMGB3O15347 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
HMGB3O15347 PTENP1-202ENST00000532280 3996 ntBASIC13.03□□□□□ -0.32
HMGB3O15347 ZNF71-201ENST00000328070 5428 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HMGB3O15347 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
HMGB3O15347 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC13.03□□□□□ -0.32
HMGB3O15347 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC13.03□□□□□ -0.32
HMGB3O15347 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HMGB3O15347 PLEKHG3-201ENST00000247226 10351 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HMGB3O15347 TCF12-201ENST00000267811 6061 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HMGB3O15347 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC13.03□□□□□ -0.32
HMGB3O15347 AL512652.2-201ENST00000625156 1716 ntBASIC13.03□□□□□ -0.32
HMGB3O15347 CICP13-201ENST00000422015 2789 ntBASIC13.03□□□□□ -0.32
HMGB3O15347 SSR4P1-203ENST00000599569 2260 ntBASIC13.03□□□□□ -0.32
HMGB3O15347 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
HMGB3O15347 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC13.03□□□□□ -0.32
HMGB3O15347 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HMGB3O15347 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
HMGB3O15347 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
HMGB3O15347 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HMGB3O15347 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC13.03□□□□□ -0.32
HMGB3O15347 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HMGB3O15347 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC13.03□□□□□ -0.32
HMGB3O15347 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HMGB3O15347 NUS1P1-201ENST00000446295 882 ntBASIC13.03□□□□□ -0.32
HMGB3O15347 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
HMGB3O15347 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC13.03□□□□□ -0.32
HMGB3O15347 CD320-202ENST00000537716 1119 ntTSL 2 BASIC13.03□□□□□ -0.32
HMGB3O15347 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC13.03□□□□□ -0.32
HMGB3O15347 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC13.03□□□□□ -0.32
HMGB3O15347 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC13.03□□□□□ -0.32
HMGB3O15347 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC13.03□□□□□ -0.32
HMGB3O15347 AC013467.2-201ENST00000605472 835 ntBASIC13.03□□□□□ -0.32
HMGB3O15347 FGF14-AS2-201ENST00000606448 1074 ntBASIC13.03□□□□□ -0.32
HMGB3O15347 AC124864.1-201ENST00000623408 392 ntBASIC13.03□□□□□ -0.32
HMGB3O15347 UMODL1-205ENST00000408910 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
HMGB3O15347 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
HMGB3O15347 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HMGB3O15347 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HMGB3O15347 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
HMGB3O15347 KRT18P22-201ENST00000402024 1347 ntBASIC13.03□□□□□ -0.32
HMGB3O15347 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC13.03□□□□□ -0.32
HMGB3O15347 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC13.03□□□□□ -0.32
HMGB3O15347 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms