Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC15.27■□□□□ 0.04
ATG4BQ9Y4P1 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC15.27■□□□□ 0.04
ATG4BQ9Y4P1 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC15.27■□□□□ 0.04
ATG4BQ9Y4P1 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC15.27■□□□□ 0.04
ATG4BQ9Y4P1 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC15.27■□□□□ 0.04
ATG4BQ9Y4P1 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC15.27■□□□□ 0.04
ATG4BQ9Y4P1 MAX-210ENST00000555419 765 ntTSL 5 BASIC15.27■□□□□ 0.04
ATG4BQ9Y4P1 AC026150.2-201ENST00000564693 1156 ntBASIC15.27■□□□□ 0.04
ATG4BQ9Y4P1 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC15.27■□□□□ 0.04
ATG4BQ9Y4P1 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
ATG4BQ9Y4P1 RAB34-224ENST00000636513 888 ntTSL 5 BASIC15.27■□□□□ 0.04
ATG4BQ9Y4P1 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC15.27■□□□□ 0.04
ATG4BQ9Y4P1 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
ATG4BQ9Y4P1 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
ATG4BQ9Y4P1 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
ATG4BQ9Y4P1 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC15.27■□□□□ 0.03
ATG4BQ9Y4P1 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ATG4BQ9Y4P1 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ATG4BQ9Y4P1 AC132872.4-202ENST00000622924 2756 ntBASIC15.27■□□□□ 0.03
ATG4BQ9Y4P1 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.27■□□□□ 0.03
ATG4BQ9Y4P1 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
ATG4BQ9Y4P1 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
ATG4BQ9Y4P1 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ATG4BQ9Y4P1 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ATG4BQ9Y4P1 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ATG4BQ9Y4P1 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
ATG4BQ9Y4P1 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.27■□□□□ 0.03
ATG4BQ9Y4P1 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.03
ATG4BQ9Y4P1 AP003680.1-201ENST00000598970 3660 ntBASIC15.27■□□□□ 0.03
ATG4BQ9Y4P1 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ATG4BQ9Y4P1 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 METTL21AP1-201ENST00000438852 635 ntBASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 AL136982.4-201ENST00000437689 1740 ntBASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 AL691432.1-201ENST00000596308 1422 ntBASIC15.26■□□□□ 0.03
ATG4BQ9Y4P1 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.25■□□□□ 0.03
ATG4BQ9Y4P1 FUK-207ENST00000571514 3054 ntTSL 2 BASIC15.25■□□□□ 0.03
ATG4BQ9Y4P1 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
ATG4BQ9Y4P1 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ATG4BQ9Y4P1 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
ATG4BQ9Y4P1 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ATG4BQ9Y4P1 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ATG4BQ9Y4P1 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ATG4BQ9Y4P1 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ATG4BQ9Y4P1 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC15.25■□□□□ 0.03
ATG4BQ9Y4P1 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ATG4BQ9Y4P1 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC15.25■□□□□ 0.03
ATG4BQ9Y4P1 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
ATG4BQ9Y4P1 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
ATG4BQ9Y4P1 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
ATG4BQ9Y4P1 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC15.25■□□□□ 0.03
ATG4BQ9Y4P1 RPL30-202ENST00000396070 440 ntTSL 2 BASIC15.25■□□□□ 0.03
ATG4BQ9Y4P1 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC15.25■□□□□ 0.03
ATG4BQ9Y4P1 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ATG4BQ9Y4P1 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.25■□□□□ 0.03
ATG4BQ9Y4P1 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC15.25■□□□□ 0.03
ATG4BQ9Y4P1 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ATG4BQ9Y4P1 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC15.25■□□□□ 0.03
ATG4BQ9Y4P1 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
ATG4BQ9Y4P1 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC15.25■□□□□ 0.03
ATG4BQ9Y4P1 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC15.25■□□□□ 0.03
ATG4BQ9Y4P1 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC15.25■□□□□ 0.03
ATG4BQ9Y4P1 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms