Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SIX2Q9NPC8 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SIX2Q9NPC8 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
SIX2Q9NPC8 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SIX2Q9NPC8 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC17.25■□□□□ 0.35
SIX2Q9NPC8 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SIX2Q9NPC8 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC17.25■□□□□ 0.35
SIX2Q9NPC8 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
SIX2Q9NPC8 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SIX2Q9NPC8 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SIX2Q9NPC8 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC17.25■□□□□ 0.35
SIX2Q9NPC8 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC17.25■□□□□ 0.35
SIX2Q9NPC8 AC112482.1-201ENST00000492080 688 ntBASIC17.25■□□□□ 0.35
SIX2Q9NPC8 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC17.25■□□□□ 0.35
SIX2Q9NPC8 NAA38-207ENST00000576861 556 ntTSL 3 BASIC17.25■□□□□ 0.35
SIX2Q9NPC8 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.25■□□□□ 0.35
SIX2Q9NPC8 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SIX2Q9NPC8 AL596257.1-201ENST00000641463 2694 ntBASIC17.25■□□□□ 0.35
SIX2Q9NPC8 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC17.25■□□□□ 0.35
SIX2Q9NPC8 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SIX2Q9NPC8 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC17.25■□□□□ 0.35
SIX2Q9NPC8 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SIX2Q9NPC8 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC17.25■□□□□ 0.35
SIX2Q9NPC8 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SIX2Q9NPC8 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 RPSAP43-201ENST00000402237 625 ntBASIC17.24■□□□□ 0.35
SIX2Q9NPC8 AL627223.1-201ENST00000416693 442 ntBASIC17.24■□□□□ 0.35
SIX2Q9NPC8 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 DNAJB3-201ENST00000446806 729 ntBASIC17.24■□□□□ 0.35
SIX2Q9NPC8 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 MAX-210ENST00000555419 765 ntTSL 5 BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC17.24■□□□□ 0.35
SIX2Q9NPC8 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SIX2Q9NPC8 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SIX2Q9NPC8 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC17.23■□□□□ 0.35
SIX2Q9NPC8 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SIX2Q9NPC8 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SIX2Q9NPC8 KRT8P37-201ENST00000451609 1420 ntBASIC17.23■□□□□ 0.35
SIX2Q9NPC8 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SIX2Q9NPC8 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SIX2Q9NPC8 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SIX2Q9NPC8 BID-213ENST00000615414 2236 ntTSL 5 BASIC17.23■□□□□ 0.35
SIX2Q9NPC8 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SIX2Q9NPC8 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC17.23■□□□□ 0.35
SIX2Q9NPC8 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SIX2Q9NPC8 KLK8-202ENST00000320838 456 ntTSL 5 BASIC17.23■□□□□ 0.35
SIX2Q9NPC8 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SIX2Q9NPC8 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
SIX2Q9NPC8 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC17.23■□□□□ 0.35
SIX2Q9NPC8 AL139010.1-201ENST00000454878 894 ntBASIC17.23■□□□□ 0.35
SIX2Q9NPC8 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC17.23■□□□□ 0.35
SIX2Q9NPC8 ALG1L8P-201ENST00000533887 760 ntBASIC17.23■□□□□ 0.35
SIX2Q9NPC8 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC17.23■□□□□ 0.35
SIX2Q9NPC8 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SIX2Q9NPC8 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC17.23■□□□□ 0.35
SIX2Q9NPC8 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC17.23■□□□□ 0.35
SIX2Q9NPC8 AC010327.4-202ENST00000591484 748 ntBASIC17.23■□□□□ 0.35
SIX2Q9NPC8 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms