Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC16.67■□□□□ 0.26
PCDH9Q9HC56 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
PCDH9Q9HC56 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PCDH9Q9HC56 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDH9Q9HC56 AC144831.1-201ENST00000573312 2656 ntBASIC16.67■□□□□ 0.26
PCDH9Q9HC56 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDH9Q9HC56 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
PCDH9Q9HC56 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDH9Q9HC56 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC16.67■□□□□ 0.26
PCDH9Q9HC56 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDH9Q9HC56 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.67■□□□□ 0.26
PCDH9Q9HC56 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.67■□□□□ 0.26
PCDH9Q9HC56 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDH9Q9HC56 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDH9Q9HC56 RPSAP43-201ENST00000402237 625 ntBASIC16.67■□□□□ 0.26
PCDH9Q9HC56 UPF3AP3-201ENST00000420996 769 ntBASIC16.67■□□□□ 0.26
PCDH9Q9HC56 AC112482.1-201ENST00000492080 688 ntBASIC16.67■□□□□ 0.26
PCDH9Q9HC56 FAM86C2P-203ENST00000528684 1004 ntBASIC16.67■□□□□ 0.26
PCDH9Q9HC56 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
PCDH9Q9HC56 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
PCDH9Q9HC56 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDH9Q9HC56 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC16.67■□□□□ 0.26
PCDH9Q9HC56 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDH9Q9HC56 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.67■□□□□ 0.26
PCDH9Q9HC56 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDH9Q9HC56 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
PCDH9Q9HC56 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
PCDH9Q9HC56 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PCDH9Q9HC56 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
PCDH9Q9HC56 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDH9Q9HC56 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDH9Q9HC56 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 AC073439.1-201ENST00000624121 1774 ntBASIC16.66■□□□□ 0.26
PCDH9Q9HC56 ELL2P1-201ENST00000413990 1906 ntBASIC16.66■□□□□ 0.26
PCDH9Q9HC56 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 TFAMP1-201ENST00000412727 736 ntBASIC16.66■□□□□ 0.26
PCDH9Q9HC56 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 MDH2-205ENST00000461263 648 ntTSL 2 BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 AKAP8P1-201ENST00000434743 1349 ntBASIC16.66■□□□□ 0.26
PCDH9Q9HC56 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 TSPY26P-202ENST00000565928 3884 ntBASIC16.66■□□□□ 0.26
PCDH9Q9HC56 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
PCDH9Q9HC56 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PCDH9Q9HC56 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.65■□□□□ 0.26
PCDH9Q9HC56 AC020658.6-201ENST00000623564 1870 ntBASIC16.65■□□□□ 0.26
PCDH9Q9HC56 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCDH9Q9HC56 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
PCDH9Q9HC56 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.65■□□□□ 0.26
PCDH9Q9HC56 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
PCDH9Q9HC56 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.65■□□□□ 0.26
PCDH9Q9HC56 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCDH9Q9HC56 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC16.65■□□□□ 0.26
PCDH9Q9HC56 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCDH9Q9HC56 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
PCDH9Q9HC56 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCDH9Q9HC56 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCDH9Q9HC56 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCDH9Q9HC56 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC16.65■□□□□ 0.26
PCDH9Q9HC56 LCK-206ENST00000373564 2137 ntTSL 5 BASIC16.65■□□□□ 0.26
PCDH9Q9HC56 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCDH9Q9HC56 COA5-202ENST00000409997 557 ntTSL 4 BASIC16.65■□□□□ 0.26
PCDH9Q9HC56 ADH5P3-201ENST00000433842 1137 ntBASIC16.65■□□□□ 0.26
PCDH9Q9HC56 CEND1P1-201ENST00000451006 455 ntBASIC16.65■□□□□ 0.26
PCDH9Q9HC56 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC16.65■□□□□ 0.26
PCDH9Q9HC56 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC16.65■□□□□ 0.26
PCDH9Q9HC56 AL135744.1-201ENST00000565098 629 ntBASIC16.65■□□□□ 0.26
PCDH9Q9HC56 MIR4321-201ENST00000592276 80 ntBASIC16.65■□□□□ 0.26
PCDH9Q9HC56 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC16.65■□□□□ 0.26
PCDH9Q9HC56 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC16.65■□□□□ 0.26
PCDH9Q9HC56 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms