Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 API5-202ENST00000420461 2009 ntTSL 2 BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 AP003680.1-201ENST00000598970 3660 ntBASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 RNU1-129P-201ENST00000384064 167 ntBASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 DUSP5P1-201ENST00000441325 1139 ntBASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 FOSL1P1-201ENST00000511041 816 ntBASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 RIN3-211ENST00000557762 517 ntTSL 3 BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 U1.21-201ENST00000580816 167 ntBASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 MIR4515-201ENST00000584082 81 ntBASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 AC008608.2-201ENST00000606089 416 ntBASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 AC008667.4-201ENST00000607370 168 ntBASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
CCDC28BQ9BUN5 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 KRT18P27-201ENST00000427733 1299 ntBASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 AC087388.1-201ENST00000571370 1112 ntBASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 AL365330.1-201ENST00000607459 531 ntBASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 AC107918.4-202ENST00000641623 219 ntBASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC15.72■□□□□ 0.11
CCDC28BQ9BUN5 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms