Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC14.34□□□□□ -0.11
VRK1Q99986 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC14.34□□□□□ -0.11
VRK1Q99986 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VRK1Q99986 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC14.34□□□□□ -0.11
VRK1Q99986 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
VRK1Q99986 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
VRK1Q99986 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC14.34□□□□□ -0.11
VRK1Q99986 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
VRK1Q99986 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
VRK1Q99986 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
VRK1Q99986 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC14.33□□□□□ -0.11
VRK1Q99986 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
VRK1Q99986 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC14.33□□□□□ -0.11
VRK1Q99986 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
VRK1Q99986 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC14.33□□□□□ -0.11
VRK1Q99986 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
VRK1Q99986 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC14.33□□□□□ -0.12
VRK1Q99986 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC14.33□□□□□ -0.12
VRK1Q99986 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
VRK1Q99986 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC14.33□□□□□ -0.12
VRK1Q99986 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
VRK1Q99986 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
VRK1Q99986 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VRK1Q99986 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
VRK1Q99986 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VRK1Q99986 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC14.33□□□□□ -0.12
VRK1Q99986 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VRK1Q99986 STOM-202ENST00000347359 870 ntTSL 2 BASIC14.33□□□□□ -0.12
VRK1Q99986 AC005237.2-201ENST00000434368 219 ntBASIC14.33□□□□□ -0.12
VRK1Q99986 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC14.33□□□□□ -0.12
VRK1Q99986 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VRK1Q99986 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC14.33□□□□□ -0.12
VRK1Q99986 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC14.33□□□□□ -0.12
VRK1Q99986 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC14.33□□□□□ -0.12
VRK1Q99986 METTL23-205ENST00000588302 925 ntTSL 5 BASIC14.33□□□□□ -0.12
VRK1Q99986 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC14.33□□□□□ -0.12
VRK1Q99986 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC14.33□□□□□ -0.12
VRK1Q99986 AC022145.2-201ENST00000598203 171 ntBASIC14.33□□□□□ -0.12
VRK1Q99986 AC027612.4-201ENST00000605371 583 ntBASIC14.33□□□□□ -0.12
VRK1Q99986 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC14.33□□□□□ -0.12
VRK1Q99986 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VRK1Q99986 WT1-AS_2.1-201ENST00000613208 137 ntBASIC14.33□□□□□ -0.12
VRK1Q99986 AC106028.4-201ENST00000614509 607 ntBASIC14.33□□□□□ -0.12
VRK1Q99986 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
VRK1Q99986 AL161645.1-201ENST00000622716 1255 ntBASIC14.33□□□□□ -0.12
VRK1Q99986 AL513210.1-201ENST00000629608 234 ntBASIC14.33□□□□□ -0.12
VRK1Q99986 FES-204ENST00000414248 2327 ntTSL 2 BASIC14.33□□□□□ -0.12
VRK1Q99986 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VRK1Q99986 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
VRK1Q99986 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC14.33□□□□□ -0.12
VRK1Q99986 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC14.33□□□□□ -0.12
VRK1Q99986 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.33□□□□□ -0.12
VRK1Q99986 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VRK1Q99986 VILL-207ENST00000465644 1857 ntTSL 5 BASIC14.33□□□□□ -0.12
VRK1Q99986 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
VRK1Q99986 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VRK1Q99986 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VRK1Q99986 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
VRK1Q99986 TOP3BP1-201ENST00000420768 1380 ntBASIC14.33□□□□□ -0.12
VRK1Q99986 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VRK1Q99986 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VRK1Q99986 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC14.32□□□□□ -0.12
VRK1Q99986 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VRK1Q99986 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
VRK1Q99986 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC14.32□□□□□ -0.12
VRK1Q99986 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VRK1Q99986 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
VRK1Q99986 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VRK1Q99986 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC14.32□□□□□ -0.12
VRK1Q99986 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VRK1Q99986 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VRK1Q99986 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VRK1Q99986 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
VRK1Q99986 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VRK1Q99986 PNMT-202ENST00000394246 821 ntTSL 2 BASIC14.32□□□□□ -0.12
VRK1Q99986 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC14.32□□□□□ -0.12
VRK1Q99986 AL355306.1-201ENST00000415580 579 ntBASIC14.32□□□□□ -0.12
VRK1Q99986 HCG4-201ENST00000418983 998 ntBASIC14.32□□□□□ -0.12
VRK1Q99986 AL645939.2-201ENST00000427340 991 ntBASIC14.32□□□□□ -0.12
VRK1Q99986 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
VRK1Q99986 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
VRK1Q99986 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VRK1Q99986 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC14.32□□□□□ -0.12
VRK1Q99986 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
VRK1Q99986 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC14.32□□□□□ -0.12
VRK1Q99986 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC14.32□□□□□ -0.12
VRK1Q99986 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC14.32□□□□□ -0.12
VRK1Q99986 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC14.32□□□□□ -0.12
VRK1Q99986 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
VRK1Q99986 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC14.32□□□□□ -0.12
VRK1Q99986 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VRK1Q99986 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VRK1Q99986 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC14.32□□□□□ -0.12
VRK1Q99986 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
VRK1Q99986 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VRK1Q99986 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC14.32□□□□□ -0.12
VRK1Q99986 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VRK1Q99986 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
VRK1Q99986 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VRK1Q99986 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms