Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 WRB-204ENST00000398753 699 ntTSL 3 BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 MIR943-201ENST00000401286 94 ntBASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 MTND6P24-201ENST00000440466 518 ntBASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 AC069120.2-201ENST00000524091 540 ntBASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 AC140878.1-201ENST00000565277 250 ntBASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 AC105021.1-202ENST00000570572 669 ntBASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 AC006449.6-201ENST00000612330 2296 ntBASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 AL035456.1-201ENST00000456064 1369 ntBASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC15.23■□□□□ 0.03
PTCHD1Q96NR3 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 AC026691.1-201ENST00000602502 2017 ntBASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 PCDHA1-201ENST00000378133 2726 ntBASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 LITAF-210ENST00000571976 548 ntTSL 2 BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 LITAF-214ENST00000574703 486 ntTSL 2 BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 NAA38-207ENST00000576861 556 ntTSL 3 BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 AC026979.3-201ENST00000607315 403 ntBASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 COQ4-205ENST00000609948 956 ntTSL 2 BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 GRAMD4P3-201ENST00000621665 1669 ntBASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC15.22■□□□□ 0.03
PTCHD1Q96NR3 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.03
PTCHD1Q96NR3 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTCHD1Q96NR3 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15.21■□□□□ 0.03
PTCHD1Q96NR3 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.21■□□□□ 0.03
PTCHD1Q96NR3 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
PTCHD1Q96NR3 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC15.21■□□□□ 0.03
PTCHD1Q96NR3 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTCHD1Q96NR3 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC15.21■□□□□ 0.03
PTCHD1Q96NR3 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
PTCHD1Q96NR3 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTCHD1Q96NR3 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.03
PTCHD1Q96NR3 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
PTCHD1Q96NR3 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms