Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC12.14□□□□□ -0.47
LINC00477Q96M19 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00477Q96M19 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00477Q96M19 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00477Q96M19 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC12.14□□□□□ -0.47
LINC00477Q96M19 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC12.14□□□□□ -0.47
LINC00477Q96M19 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC12.14□□□□□ -0.47
LINC00477Q96M19 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC12.14□□□□□ -0.47
LINC00477Q96M19 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC12.14□□□□□ -0.47
LINC00477Q96M19 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00477Q96M19 AL009183.1-201ENST00000603760 355 ntBASIC12.14□□□□□ -0.47
LINC00477Q96M19 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00477Q96M19 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00477Q96M19 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
LINC00477Q96M19 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00477Q96M19 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
LINC00477Q96M19 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
LINC00477Q96M19 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC12.14□□□□□ -0.47
LINC00477Q96M19 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC12.14□□□□□ -0.47
LINC00477Q96M19 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00477Q96M19 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.47
LINC00477Q96M19 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
LINC00477Q96M19 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00477Q96M19 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00477Q96M19 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00477Q96M19 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00477Q96M19 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC12.14□□□□□ -0.47
LINC00477Q96M19 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00477Q96M19 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00477Q96M19 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00477Q96M19 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00477Q96M19 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
LINC00477Q96M19 DKFZP434H168-201ENST00000567381 1905 ntBASIC12.13□□□□□ -0.47
LINC00477Q96M19 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC12.13□□□□□ -0.47
LINC00477Q96M19 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC12.13□□□□□ -0.47
LINC00477Q96M19 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
LINC00477Q96M19 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
LINC00477Q96M19 BANP-201ENST00000286122 2368 ntTSL 5 BASIC12.13□□□□□ -0.47
LINC00477Q96M19 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC12.13□□□□□ -0.47
LINC00477Q96M19 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
LINC00477Q96M19 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00477Q96M19 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC12.13□□□□□ -0.47
LINC00477Q96M19 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00477Q96M19 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00477Q96M19 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00477Q96M19 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00477Q96M19 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC12.13□□□□□ -0.47
LINC00477Q96M19 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00477Q96M19 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00477Q96M19 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC12.13□□□□□ -0.47
LINC00477Q96M19 AL031284.1-201ENST00000419297 478 ntBASIC12.13□□□□□ -0.47
LINC00477Q96M19 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
LINC00477Q96M19 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC12.13□□□□□ -0.47
LINC00477Q96M19 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00477Q96M19 RHOQP3-201ENST00000437982 621 ntBASIC12.13□□□□□ -0.47
LINC00477Q96M19 MDH2-205ENST00000461263 648 ntTSL 2 BASIC12.13□□□□□ -0.47
LINC00477Q96M19 PPIE-208ENST00000470213 927 ntTSL 3 BASIC12.13□□□□□ -0.47
LINC00477Q96M19 NMU-203ENST00000507338 658 ntTSL 3 BASIC12.13□□□□□ -0.47
LINC00477Q96M19 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC12.13□□□□□ -0.47
LINC00477Q96M19 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC12.13□□□□□ -0.47
LINC00477Q96M19 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC12.13□□□□□ -0.47
LINC00477Q96M19 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00477Q96M19 CALM3-211ENST00000598871 561 ntTSL 4 BASIC12.13□□□□□ -0.47
LINC00477Q96M19 AC023141.13-201ENST00000604991 943 ntBASIC12.13□□□□□ -0.47
LINC00477Q96M19 AL078644.1-201ENST00000609881 752 ntBASIC12.13□□□□□ -0.47
LINC00477Q96M19 AC148477.8-201ENST00000624298 468 ntBASIC12.13□□□□□ -0.47
LINC00477Q96M19 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00477Q96M19 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00477Q96M19 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC12.13□□□□□ -0.47
LINC00477Q96M19 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00477Q96M19 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
LINC00477Q96M19 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC12.13□□□□□ -0.47
LINC00477Q96M19 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00477Q96M19 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00477Q96M19 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00477Q96M19 ANKRD26P3-201ENST00000454044 2748 ntBASIC12.13□□□□□ -0.47
LINC00477Q96M19 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC12.13□□□□□ -0.47
LINC00477Q96M19 AC011477.6-201ENST00000604980 1927 ntBASIC12.13□□□□□ -0.47
LINC00477Q96M19 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00477Q96M19 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00477Q96M19 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00477Q96M19 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00477Q96M19 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
LINC00477Q96M19 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC12.13□□□□□ -0.47
LINC00477Q96M19 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC12.12□□□□□ -0.47
LINC00477Q96M19 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00477Q96M19 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00477Q96M19 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC12.12□□□□□ -0.47
LINC00477Q96M19 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00477Q96M19 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00477Q96M19 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC12.12□□□□□ -0.47
LINC00477Q96M19 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00477Q96M19 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00477Q96M19 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
LINC00477Q96M19 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00477Q96M19 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
LINC00477Q96M19 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00477Q96M19 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00477Q96M19 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
LINC00477Q96M19 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC12.12□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms