Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
ERCC4Q92889 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
ERCC4Q92889 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC18.35■□□□□ 0.53
ERCC4Q92889 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC18.35■□□□□ 0.53
ERCC4Q92889 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
ERCC4Q92889 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC18.35■□□□□ 0.53
ERCC4Q92889 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC18.35■□□□□ 0.53
ERCC4Q92889 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC18.35■□□□□ 0.53
ERCC4Q92889 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC18.35■□□□□ 0.53
ERCC4Q92889 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ERCC4Q92889 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ERCC4Q92889 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ERCC4Q92889 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
ERCC4Q92889 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
ERCC4Q92889 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC18.35■□□□□ 0.53
ERCC4Q92889 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC18.35■□□□□ 0.53
ERCC4Q92889 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ERCC4Q92889 TNRC18P2-201ENST00000417666 2714 ntBASIC18.35■□□□□ 0.53
ERCC4Q92889 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ERCC4Q92889 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
ERCC4Q92889 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ERCC4Q92889 MIR648-201ENST00000385046 94 ntBASIC18.35■□□□□ 0.53
ERCC4Q92889 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC18.35■□□□□ 0.53
ERCC4Q92889 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC18.35■□□□□ 0.53
ERCC4Q92889 UNC93B6-202ENST00000528242 690 ntBASIC18.35■□□□□ 0.53
ERCC4Q92889 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC18.35■□□□□ 0.53
ERCC4Q92889 CALM3-211ENST00000598871 561 ntTSL 4 BASIC18.35■□□□□ 0.53
ERCC4Q92889 AC104692.2-201ENST00000603054 253 ntBASIC18.35■□□□□ 0.53
ERCC4Q92889 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ERCC4Q92889 GSN-206ENST00000394353 2311 ntTSL 2 BASIC18.35■□□□□ 0.53
ERCC4Q92889 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ERCC4Q92889 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC18.35■□□□□ 0.53
ERCC4Q92889 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC18.35■□□□□ 0.53
ERCC4Q92889 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC18.35■□□□□ 0.53
ERCC4Q92889 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC18.35■□□□□ 0.53
ERCC4Q92889 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC18.34■□□□□ 0.53
ERCC4Q92889 AMT-233ENST00000636522 1620 ntTSL 2 BASIC18.34■□□□□ 0.53
ERCC4Q92889 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC18.34■□□□□ 0.53
ERCC4Q92889 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC18.34■□□□□ 0.53
ERCC4Q92889 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC4Q92889 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC4Q92889 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC4Q92889 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC4Q92889 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC18.34■□□□□ 0.53
ERCC4Q92889 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC4Q92889 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC18.34■□□□□ 0.53
ERCC4Q92889 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC4Q92889 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC18.34■□□□□ 0.53
ERCC4Q92889 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC18.34■□□□□ 0.53
ERCC4Q92889 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC4Q92889 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC4Q92889 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC18.34■□□□□ 0.53
ERCC4Q92889 AC009947.1-201ENST00000444350 727 ntBASIC18.34■□□□□ 0.53
ERCC4Q92889 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
ERCC4Q92889 AP002469.2-201ENST00000531724 424 ntBASIC18.34■□□□□ 0.53
ERCC4Q92889 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC4Q92889 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC4Q92889 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC18.34■□□□□ 0.53
ERCC4Q92889 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC18.34■□□□□ 0.53
ERCC4Q92889 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC4Q92889 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC18.34■□□□□ 0.53
ERCC4Q92889 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
ERCC4Q92889 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC4Q92889 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC4Q92889 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC4Q92889 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC4Q92889 TK2-221ENST00000620035 5060 ntTSL 2 BASIC18.34■□□□□ 0.53
ERCC4Q92889 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC4Q92889 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC4Q92889 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC18.34■□□□□ 0.53
ERCC4Q92889 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC4Q92889 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC4Q92889 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ERCC4Q92889 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
ERCC4Q92889 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
ERCC4Q92889 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
ERCC4Q92889 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
ERCC4Q92889 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.53
ERCC4Q92889 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
ERCC4Q92889 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
ERCC4Q92889 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC18.33■□□□□ 0.53
ERCC4Q92889 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
ERCC4Q92889 SSR4P1-203ENST00000599569 2260 ntBASIC18.33■□□□□ 0.53
ERCC4Q92889 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
ERCC4Q92889 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
ERCC4Q92889 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC18.33■□□□□ 0.52
ERCC4Q92889 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ERCC4Q92889 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC18.33■□□□□ 0.52
ERCC4Q92889 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC18.33■□□□□ 0.52
ERCC4Q92889 AL031284.1-201ENST00000419297 478 ntBASIC18.33■□□□□ 0.52
ERCC4Q92889 VN2R19P-201ENST00000442399 1052 ntBASIC18.33■□□□□ 0.52
ERCC4Q92889 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
ERCC4Q92889 RNA5SP419-201ENST00000515908 135 ntBASIC18.33■□□□□ 0.52
ERCC4Q92889 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
ERCC4Q92889 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC18.33■□□□□ 0.52
ERCC4Q92889 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC18.33■□□□□ 0.52
ERCC4Q92889 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC18.33■□□□□ 0.52
ERCC4Q92889 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC18.33■□□□□ 0.52
ERCC4Q92889 AC010507.1-201ENST00000633895 436 ntBASIC18.33■□□□□ 0.52
ERCC4Q92889 TPO-203ENST00000346956 2923 ntTSL 5 BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms