Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 AL139384.1-201ENST00000612143 3047 ntBASIC16.38■□□□□ 0.21
SHROOM3Q8TF72 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 AC022494.1-201ENST00000466044 728 ntBASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 EHF-205ENST00000527935 557 ntTSL 2 BASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 SUOX-214ENST00000551841 906 ntTSL 3 BASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 AC008761.3-201ENST00000624803 892 ntBASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 AL139010.1-201ENST00000454878 894 ntBASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 AC018529.1-201ENST00000613063 361 ntBASIC16.37■□□□□ 0.21
SHROOM3Q8TF72 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SHROOM3Q8TF72 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SHROOM3Q8TF72 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SHROOM3Q8TF72 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SHROOM3Q8TF72 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SHROOM3Q8TF72 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
SHROOM3Q8TF72 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
SHROOM3Q8TF72 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SHROOM3Q8TF72 PPT1-215ENST00000641471 2368 ntBASIC16.36■□□□□ 0.21
SHROOM3Q8TF72 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SHROOM3Q8TF72 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.36■□□□□ 0.21
SHROOM3Q8TF72 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
SHROOM3Q8TF72 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SHROOM3Q8TF72 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC16.36■□□□□ 0.21
SHROOM3Q8TF72 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SHROOM3Q8TF72 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
SHROOM3Q8TF72 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
SHROOM3Q8TF72 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SHROOM3Q8TF72 PTK7-212ENST00000476760 902 ntTSL 2 BASIC16.36■□□□□ 0.21
SHROOM3Q8TF72 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
SHROOM3Q8TF72 RNA5SP421-201ENST00000516864 134 ntBASIC16.36■□□□□ 0.21
SHROOM3Q8TF72 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
SHROOM3Q8TF72 BAD-207ENST00000544785 525 ntTSL 3 BASIC16.36■□□□□ 0.21
SHROOM3Q8TF72 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC16.36■□□□□ 0.21
SHROOM3Q8TF72 AC243562.2-201ENST00000561247 970 ntBASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 157.6 ms