Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 COPS8-203ENST00000409334 794 ntTSL 5 BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
NUDCD3Q8IVD9 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
NUDCD3Q8IVD9 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
NUDCD3Q8IVD9 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
NUDCD3Q8IVD9 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
NUDCD3Q8IVD9 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 TPO-203ENST00000346956 2923 ntTSL 5 BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 LAGE3P1-201ENST00000425356 484 ntBASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 AC025062.2-201ENST00000605477 670 ntBASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NUDCD3Q8IVD9 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
NUDCD3Q8IVD9 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC16.07■□□□□ 0.16
NUDCD3Q8IVD9 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
NUDCD3Q8IVD9 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NUDCD3Q8IVD9 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC16.07■□□□□ 0.16
NUDCD3Q8IVD9 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NUDCD3Q8IVD9 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NUDCD3Q8IVD9 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NUDCD3Q8IVD9 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
NUDCD3Q8IVD9 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NUDCD3Q8IVD9 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NUDCD3Q8IVD9 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC16.07■□□□□ 0.16
NUDCD3Q8IVD9 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.07■□□□□ 0.16
NUDCD3Q8IVD9 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
NUDCD3Q8IVD9 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.07■□□□□ 0.16
NUDCD3Q8IVD9 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.07■□□□□ 0.16
NUDCD3Q8IVD9 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC16.07■□□□□ 0.16
NUDCD3Q8IVD9 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.07■□□□□ 0.16
NUDCD3Q8IVD9 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
NUDCD3Q8IVD9 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms