Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC19.48■□□□□ 0.71
VPS53Q5VIR6 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC19.48■□□□□ 0.71
VPS53Q5VIR6 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC19.48■□□□□ 0.71
VPS53Q5VIR6 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS53Q5VIR6 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS53Q5VIR6 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS53Q5VIR6 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC19.48■□□□□ 0.71
VPS53Q5VIR6 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VPS53Q5VIR6 AC008677.1-201ENST00000519230 1561 ntBASIC19.48■□□□□ 0.71
VPS53Q5VIR6 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS53Q5VIR6 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS53Q5VIR6 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS53Q5VIR6 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
VPS53Q5VIR6 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
VPS53Q5VIR6 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC19.47■□□□□ 0.71
VPS53Q5VIR6 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC19.47■□□□□ 0.71
VPS53Q5VIR6 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
VPS53Q5VIR6 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC19.47■□□□□ 0.71
VPS53Q5VIR6 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC19.47■□□□□ 0.71
VPS53Q5VIR6 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VPS53Q5VIR6 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VPS53Q5VIR6 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC19.47■□□□□ 0.71
VPS53Q5VIR6 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
VPS53Q5VIR6 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VPS53Q5VIR6 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS53Q5VIR6 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VPS53Q5VIR6 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS53Q5VIR6 HLA-H-201ENST00000383620 1096 ntBASIC19.47■□□□□ 0.71
VPS53Q5VIR6 RPL30-202ENST00000396070 440 ntTSL 2 BASIC19.47■□□□□ 0.71
VPS53Q5VIR6 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS53Q5VIR6 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS53Q5VIR6 RNA5SP410-201ENST00000516285 106 ntBASIC19.47■□□□□ 0.71
VPS53Q5VIR6 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS53Q5VIR6 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
VPS53Q5VIR6 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC19.47■□□□□ 0.71
VPS53Q5VIR6 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC19.47■□□□□ 0.71
VPS53Q5VIR6 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS53Q5VIR6 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS53Q5VIR6 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
VPS53Q5VIR6 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
VPS53Q5VIR6 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS53Q5VIR6 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
VPS53Q5VIR6 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC19.47■□□□□ 0.71
VPS53Q5VIR6 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS53Q5VIR6 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS53Q5VIR6 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
VPS53Q5VIR6 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS53Q5VIR6 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC19.46■□□□□ 0.71
VPS53Q5VIR6 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
VPS53Q5VIR6 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS53Q5VIR6 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC19.46■□□□□ 0.71
VPS53Q5VIR6 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC19.46■□□□□ 0.71
VPS53Q5VIR6 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS53Q5VIR6 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC19.46■□□□□ 0.71
VPS53Q5VIR6 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC19.46■□□□□ 0.71
VPS53Q5VIR6 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC19.46■□□□□ 0.71
VPS53Q5VIR6 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS53Q5VIR6 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS53Q5VIR6 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS53Q5VIR6 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
VPS53Q5VIR6 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
VPS53Q5VIR6 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VPS53Q5VIR6 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC19.46■□□□□ 0.71
VPS53Q5VIR6 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC19.46■□□□□ 0.71
VPS53Q5VIR6 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VPS53Q5VIR6 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC19.46■□□□□ 0.71
VPS53Q5VIR6 RPL28-205ENST00000558131 444 ntTSL 5 BASIC19.46■□□□□ 0.71
VPS53Q5VIR6 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS53Q5VIR6 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC19.46■□□□□ 0.71
VPS53Q5VIR6 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
VPS53Q5VIR6 AP001059.3-201ENST00000619053 235 ntBASIC19.46■□□□□ 0.71
VPS53Q5VIR6 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS53Q5VIR6 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
VPS53Q5VIR6 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 SLBP-205ENST00000488267 987 ntTSL 2 BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 BANF1P1-201ENST00000553684 263 ntBASIC19.45■□□□□ 0.7
VPS53Q5VIR6 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS53Q5VIR6 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms