Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
PRKDCP78527 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
PRKDCP78527 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC11.34□□□□□ -0.59
PRKDCP78527 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC11.34□□□□□ -0.59
PRKDCP78527 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC11.34□□□□□ -0.59
PRKDCP78527 FO393412.1-201ENST00000619841 382 ntBASIC11.34□□□□□ -0.59
PRKDCP78527 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
PRKDCP78527 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
PRKDCP78527 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC11.34□□□□□ -0.59
PRKDCP78527 HLA-A-202ENST00000376806 1854 ntBASIC11.34□□□□□ -0.59
PRKDCP78527 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
PRKDCP78527 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC11.34□□□□□ -0.59
PRKDCP78527 AL008707.1-201ENST00000422498 534 ntBASIC11.34□□□□□ -0.59
PRKDCP78527 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC11.34□□□□□ -0.59
PRKDCP78527 REEP5-205ENST00000504247 480 ntTSL 5 BASIC11.34□□□□□ -0.59
PRKDCP78527 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC11.34□□□□□ -0.59
PRKDCP78527 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC11.34□□□□□ -0.59
PRKDCP78527 MIR4783-201ENST00000580343 82 ntBASIC11.34□□□□□ -0.59
PRKDCP78527 AP005019.2-201ENST00000615104 511 ntBASIC11.34□□□□□ -0.59
PRKDCP78527 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC11.34□□□□□ -0.59
PRKDCP78527 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC11.34□□□□□ -0.59
PRKDCP78527 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC11.34□□□□□ -0.59
PRKDCP78527 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC11.34□□□□□ -0.59
PRKDCP78527 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC11.33□□□□□ -0.59
PRKDCP78527 NDUFS6P1-201ENST00000485187 316 ntBASIC11.33□□□□□ -0.59
PRKDCP78527 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC11.33□□□□□ -0.59
PRKDCP78527 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC11.33□□□□□ -0.59
PRKDCP78527 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
PRKDCP78527 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC11.33□□□□□ -0.6
PRKDCP78527 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC11.33□□□□□ -0.6
PRKDCP78527 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
PRKDCP78527 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC11.33□□□□□ -0.6
PRKDCP78527 AL603756.1-201ENST00000606511 2163 ntBASIC11.33□□□□□ -0.6
PRKDCP78527 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
PRKDCP78527 REXO1L1P-202ENST00000608646 1974 ntBASIC11.33□□□□□ -0.6
PRKDCP78527 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
PRKDCP78527 FAM86KP-201ENST00000509817 987 ntBASIC11.33□□□□□ -0.6
PRKDCP78527 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC11.33□□□□□ -0.6
PRKDCP78527 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
PRKDCP78527 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
PRKDCP78527 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
PRKDCP78527 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC11.33□□□□□ -0.6
PRKDCP78527 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC11.33□□□□□ -0.6
PRKDCP78527 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC11.33□□□□□ -0.6
PRKDCP78527 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
PRKDCP78527 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC11.33□□□□□ -0.6
PRKDCP78527 AC018892.3-201ENST00000623986 2499 ntBASIC11.33□□□□□ -0.6
PRKDCP78527 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
PRKDCP78527 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
PRKDCP78527 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
PRKDCP78527 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
PRKDCP78527 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
PRKDCP78527 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
PRKDCP78527 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
PRKDCP78527 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
PRKDCP78527 AC011742.3-201ENST00000439053 820 ntBASIC11.33□□□□□ -0.6
PRKDCP78527 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC11.33□□□□□ -0.6
PRKDCP78527 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC11.33□□□□□ -0.6
PRKDCP78527 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC11.33□□□□□ -0.6
PRKDCP78527 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC11.33□□□□□ -0.6
PRKDCP78527 AC244250.3-201ENST00000620749 366 ntBASIC11.33□□□□□ -0.6
PRKDCP78527 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
PRKDCP78527 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC11.33□□□□□ -0.6
PRKDCP78527 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC11.33□□□□□ -0.6
PRKDCP78527 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
PRKDCP78527 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
PRKDCP78527 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC11.33□□□□□ -0.6
PRKDCP78527 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
PRKDCP78527 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
PRKDCP78527 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC11.33□□□□□ -0.6
PRKDCP78527 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
PRKDCP78527 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC11.33□□□□□ -0.6
PRKDCP78527 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC11.33□□□□□ -0.6
PRKDCP78527 AP001582.1-201ENST00000525856 295 ntBASIC11.33□□□□□ -0.6
PRKDCP78527 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC11.33□□□□□ -0.6
PRKDCP78527 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC11.33□□□□□ -0.6
PRKDCP78527 AC012044.1-201ENST00000603431 297 ntBASIC11.33□□□□□ -0.6
PRKDCP78527 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC11.33□□□□□ -0.6
PRKDCP78527 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC11.33□□□□□ -0.6
PRKDCP78527 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC11.32□□□□□ -0.6
PRKDCP78527 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC11.32□□□□□ -0.6
PRKDCP78527 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC11.32□□□□□ -0.6
PRKDCP78527 ABALON-201ENST00000629058 1903 ntBASIC11.32□□□□□ -0.6
PRKDCP78527 AC148477.4-201ENST00000613430 1793 ntBASIC11.32□□□□□ -0.6
PRKDCP78527 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
PRKDCP78527 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
PRKDCP78527 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC11.32□□□□□ -0.6
PRKDCP78527 AL391280.1-201ENST00000506969 1062 ntBASIC11.32□□□□□ -0.6
PRKDCP78527 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC11.32□□□□□ -0.6
PRKDCP78527 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
PRKDCP78527 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC11.32□□□□□ -0.6
PRKDCP78527 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC11.32□□□□□ -0.6
PRKDCP78527 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
PRKDCP78527 AC090164.3-201ENST00000610780 2143 ntBASIC11.32□□□□□ -0.6
PRKDCP78527 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
PRKDCP78527 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
PRKDCP78527 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
PRKDCP78527 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC11.32□□□□□ -0.6
PRKDCP78527 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
PRKDCP78527 TK1-203ENST00000588734 1681 ntTSL 2 BASIC11.32□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms