Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ABCA4P78363 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
ABCA4P78363 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
ABCA4P78363 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC13.86□□□□□ -0.19
ABCA4P78363 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC13.86□□□□□ -0.19
ABCA4P78363 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC13.86□□□□□ -0.19
ABCA4P78363 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC13.86□□□□□ -0.19
ABCA4P78363 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ABCA4P78363 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
ABCA4P78363 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
ABCA4P78363 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ABCA4P78363 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
ABCA4P78363 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
ABCA4P78363 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ABCA4P78363 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC13.86□□□□□ -0.19
ABCA4P78363 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ABCA4P78363 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
ABCA4P78363 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
ABCA4P78363 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ABCA4P78363 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC13.86□□□□□ -0.19
ABCA4P78363 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ABCA4P78363 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC13.86□□□□□ -0.19
ABCA4P78363 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
ABCA4P78363 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA4P78363 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA4P78363 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA4P78363 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA4P78363 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA4P78363 APOA1-205ENST00000375329 927 ntTSL 2 BASIC13.85□□□□□ -0.19
ABCA4P78363 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
ABCA4P78363 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA4P78363 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA4P78363 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC13.85□□□□□ -0.19
ABCA4P78363 AC245100.5-201ENST00000452108 331 ntBASIC13.85□□□□□ -0.19
ABCA4P78363 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA4P78363 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
ABCA4P78363 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC13.85□□□□□ -0.19
ABCA4P78363 MFF-223ENST00000524634 647 ntTSL 2 BASIC13.85□□□□□ -0.19
ABCA4P78363 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA4P78363 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC13.85□□□□□ -0.19
ABCA4P78363 AC093726.1-201ENST00000608064 963 ntBASIC13.85□□□□□ -0.19
ABCA4P78363 RPSAP52-203ENST00000622976 1023 ntBASIC13.85□□□□□ -0.19
ABCA4P78363 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
ABCA4P78363 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA4P78363 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA4P78363 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC13.85□□□□□ -0.19
ABCA4P78363 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
ABCA4P78363 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA4P78363 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA4P78363 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
ABCA4P78363 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
ABCA4P78363 AL662844.4-201ENST00000606367 2838 ntBASIC13.85□□□□□ -0.19
ABCA4P78363 STX1A-203ENST00000395155 783 ntTSL 2 BASIC13.85□□□□□ -0.19
ABCA4P78363 AZGP1P1-201ENST00000411909 902 ntBASIC13.85□□□□□ -0.19
ABCA4P78363 HIST3H2BA-201ENST00000436555 524 ntBASIC13.85□□□□□ -0.19
ABCA4P78363 CD74-212ENST00000524315 584 ntTSL 5 BASIC13.85□□□□□ -0.19
ABCA4P78363 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC13.85□□□□□ -0.19
ABCA4P78363 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC13.85□□□□□ -0.19
ABCA4P78363 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
ABCA4P78363 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
ABCA4P78363 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA4P78363 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC13.85□□□□□ -0.19
ABCA4P78363 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA4P78363 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA4P78363 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA4P78363 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA4P78363 PCDHB18P-201ENST00000524813 2368 ntBASIC13.85□□□□□ -0.19
ABCA4P78363 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA4P78363 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA4P78363 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC13.85□□□□□ -0.19
ABCA4P78363 LINC02199-201ENST00000506655 2702 ntBASIC13.85□□□□□ -0.19
ABCA4P78363 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC13.85□□□□□ -0.19
ABCA4P78363 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
ABCA4P78363 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA4P78363 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
ABCA4P78363 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
ABCA4P78363 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA4P78363 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC13.84□□□□□ -0.19
ABCA4P78363 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
ABCA4P78363 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC13.84□□□□□ -0.19
ABCA4P78363 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA4P78363 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC13.84□□□□□ -0.19
ABCA4P78363 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA4P78363 RN7SL399P-201ENST00000471648 279 ntBASIC13.84□□□□□ -0.19
ABCA4P78363 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC13.84□□□□□ -0.19
ABCA4P78363 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
ABCA4P78363 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
ABCA4P78363 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC13.84□□□□□ -0.19
ABCA4P78363 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA4P78363 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC13.84□□□□□ -0.19
ABCA4P78363 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
ABCA4P78363 AL391256.1-201ENST00000443260 1855 ntBASIC13.84□□□□□ -0.19
ABCA4P78363 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA4P78363 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC13.84□□□□□ -0.19
ABCA4P78363 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC13.84□□□□□ -0.19
ABCA4P78363 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC13.84□□□□□ -0.19
ABCA4P78363 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC13.84□□□□□ -0.19
ABCA4P78363 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC13.84□□□□□ -0.19
ABCA4P78363 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ABCA4P78363 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms