Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC22.01■■□□□ 1.11
MSH6P52701 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
MSH6P52701 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC22■■□□□ 1.11
MSH6P52701 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
MSH6P52701 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC22■■□□□ 1.11
MSH6P52701 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC22■■□□□ 1.11
MSH6P52701 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC22■■□□□ 1.11
MSH6P52701 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
MSH6P52701 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
MSH6P52701 HNRNPUP1-201ENST00000554987 333 ntBASIC22■■□□□ 1.11
MSH6P52701 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC22■■□□□ 1.11
MSH6P52701 GPX4-206ENST00000588919 803 ntTSL 2 BASIC22■■□□□ 1.11
MSH6P52701 AC093813.1-201ENST00000605066 256 ntBASIC22■■□□□ 1.11
MSH6P52701 AP001505.2-201ENST00000616815 443 ntBASIC22■■□□□ 1.11
MSH6P52701 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC22■■□□□ 1.11
MSH6P52701 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC22■■□□□ 1.11
MSH6P52701 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC22■■□□□ 1.11
MSH6P52701 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC22■■□□□ 1.11
MSH6P52701 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC22■■□□□ 1.11
MSH6P52701 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
MSH6P52701 AL138709.1-201ENST00000614840 1693 ntBASIC22■■□□□ 1.11
MSH6P52701 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
MSH6P52701 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
MSH6P52701 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
MSH6P52701 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
MSH6P52701 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
MSH6P52701 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
MSH6P52701 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC22■■□□□ 1.11
MSH6P52701 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
MSH6P52701 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC22■■□□□ 1.11
MSH6P52701 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC21.99■■□□□ 1.11
MSH6P52701 FTLP1-201ENST00000449155 526 ntBASIC21.99■■□□□ 1.11
MSH6P52701 FTLP10-202ENST00000505798 471 ntBASIC21.99■■□□□ 1.11
MSH6P52701 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC21.99■■□□□ 1.11
MSH6P52701 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC21.99■■□□□ 1.11
MSH6P52701 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC21.99■■□□□ 1.11
MSH6P52701 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC21.99■■□□□ 1.11
MSH6P52701 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC21.99■■□□□ 1.11
MSH6P52701 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC21.99■■□□□ 1.11
MSH6P52701 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH6P52701 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC21.99■■□□□ 1.11
MSH6P52701 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC21.99■■□□□ 1.11
MSH6P52701 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH6P52701 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH6P52701 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH6P52701 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC21.99■■□□□ 1.11
MSH6P52701 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH6P52701 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC21.99■■□□□ 1.11
MSH6P52701 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC21.99■■□□□ 1.11
MSH6P52701 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
MSH6P52701 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
MSH6P52701 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
MSH6P52701 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
MSH6P52701 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
MSH6P52701 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
MSH6P52701 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH6P52701 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
MSH6P52701 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC21.99■■□□□ 1.11
MSH6P52701 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC21.99■■□□□ 1.11
MSH6P52701 AC245100.5-201ENST00000452108 331 ntBASIC21.99■■□□□ 1.11
MSH6P52701 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC21.99■■□□□ 1.11
MSH6P52701 AC126915.1-201ENST00000522847 1038 ntBASIC21.99■■□□□ 1.11
MSH6P52701 AP001582.1-201ENST00000525856 295 ntBASIC21.99■■□□□ 1.11
MSH6P52701 AC107373.2-201ENST00000607735 490 ntBASIC21.99■■□□□ 1.11
MSH6P52701 AC006453.4-201ENST00000636949 1252 ntBASIC21.99■■□□□ 1.11
MSH6P52701 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
MSH6P52701 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
MSH6P52701 AC026471.1-201ENST00000564629 3026 ntBASIC21.98■■□□□ 1.11
MSH6P52701 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC21.98■■□□□ 1.11
MSH6P52701 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
MSH6P52701 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
MSH6P52701 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
MSH6P52701 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
MSH6P52701 LETM1P2-201ENST00000597330 2178 ntBASIC21.98■■□□□ 1.11
MSH6P52701 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
MSH6P52701 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
MSH6P52701 MIR769-201ENST00000390225 118 ntBASIC21.98■■□□□ 1.11
MSH6P52701 CYP46A4P-201ENST00000414953 267 ntBASIC21.98■■□□□ 1.11
MSH6P52701 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
MSH6P52701 HSPB1P2-201ENST00000448722 546 ntBASIC21.98■■□□□ 1.11
MSH6P52701 KRT18P25-201ENST00000508931 1278 ntBASIC21.98■■□□□ 1.11
MSH6P52701 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC21.98■■□□□ 1.11
MSH6P52701 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC21.98■■□□□ 1.11
MSH6P52701 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC21.98■■□□□ 1.11
MSH6P52701 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC21.98■■□□□ 1.11
MSH6P52701 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
MSH6P52701 AC138649.2-201ENST00000615886 705 ntBASIC21.98■■□□□ 1.11
MSH6P52701 AC145423.3-201ENST00000615987 467 ntBASIC21.98■■□□□ 1.11
MSH6P52701 BANP-227ENST00000626016 2144 ntTSL 2 BASIC21.98■■□□□ 1.11
MSH6P52701 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC21.98■■□□□ 1.11
MSH6P52701 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC21.98■■□□□ 1.11
MSH6P52701 EML3-212ENST00000494176 2901 ntTSL 2 BASIC21.98■■□□□ 1.11
MSH6P52701 EML3-216ENST00000529309 2909 ntTSL 2 BASIC21.98■■□□□ 1.11
MSH6P52701 AL645608.8-201ENST00000606034 2086 ntBASIC21.98■■□□□ 1.11
MSH6P52701 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
MSH6P52701 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC21.97■■□□□ 1.11
MSH6P52701 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC21.97■■□□□ 1.11
MSH6P52701 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
MSH6P52701 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
MSH6P52701 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms