Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CDX1P47902 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CDX1P47902 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CDX1P47902 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC13.26□□□□□ -0.29
CDX1P47902 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
CDX1P47902 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CDX1P47902 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CDX1P47902 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CDX1P47902 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CDX1P47902 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CDX1P47902 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
CDX1P47902 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
CDX1P47902 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC13.26□□□□□ -0.29
CDX1P47902 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC13.26□□□□□ -0.29
CDX1P47902 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC13.26□□□□□ -0.29
CDX1P47902 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC13.26□□□□□ -0.29
CDX1P47902 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC13.26□□□□□ -0.29
CDX1P47902 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC13.26□□□□□ -0.29
CDX1P47902 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC13.26□□□□□ -0.29
CDX1P47902 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC13.26□□□□□ -0.29
CDX1P47902 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
CDX1P47902 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC13.26□□□□□ -0.29
CDX1P47902 MIR3687-2-201ENST00000577708 61 ntBASIC13.26□□□□□ -0.29
CDX1P47902 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC13.26□□□□□ -0.29
CDX1P47902 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CDX1P47902 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC13.26□□□□□ -0.29
CDX1P47902 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC13.26□□□□□ -0.29
CDX1P47902 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC13.26□□□□□ -0.29
CDX1P47902 MIR3687-1-201ENST00000614492 61 ntBASIC13.26□□□□□ -0.29
CDX1P47902 AC007064.4-201ENST00000637740 555 ntBASIC13.26□□□□□ -0.29
CDX1P47902 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC13.26□□□□□ -0.29
CDX1P47902 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
CDX1P47902 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CDX1P47902 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CDX1P47902 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC13.26□□□□□ -0.29
CDX1P47902 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
CDX1P47902 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CDX1P47902 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC13.26□□□□□ -0.29
CDX1P47902 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CDX1P47902 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CDX1P47902 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CDX1P47902 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CDX1P47902 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CDX1P47902 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
CDX1P47902 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC13.25□□□□□ -0.29
CDX1P47902 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CDX1P47902 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CDX1P47902 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CDX1P47902 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CDX1P47902 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
CDX1P47902 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CDX1P47902 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CDX1P47902 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CDX1P47902 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CDX1P47902 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CDX1P47902 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CDX1P47902 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC13.25□□□□□ -0.29
CDX1P47902 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
CDX1P47902 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CDX1P47902 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
CDX1P47902 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CDX1P47902 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
CDX1P47902 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CDX1P47902 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
CDX1P47902 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CDX1P47902 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC13.25□□□□□ -0.29
CDX1P47902 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
CDX1P47902 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CDX1P47902 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
CDX1P47902 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
CDX1P47902 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CDX1P47902 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CDX1P47902 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC13.25□□□□□ -0.29
CDX1P47902 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC13.25□□□□□ -0.29
CDX1P47902 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC13.25□□□□□ -0.29
CDX1P47902 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC13.25□□□□□ -0.29
CDX1P47902 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
CDX1P47902 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC13.25□□□□□ -0.29
CDX1P47902 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC13.25□□□□□ -0.29
CDX1P47902 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC13.25□□□□□ -0.29
CDX1P47902 COX5A-206ENST00000568783 571 ntTSL 3 BASIC13.25□□□□□ -0.29
CDX1P47902 OR7E47P-204ENST00000575924 449 ntBASIC13.25□□□□□ -0.29
CDX1P47902 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC13.25□□□□□ -0.29
CDX1P47902 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC13.25□□□□□ -0.29
CDX1P47902 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CDX1P47902 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC13.25□□□□□ -0.29
CDX1P47902 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
CDX1P47902 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC13.25□□□□□ -0.29
CDX1P47902 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC13.25□□□□□ -0.29
CDX1P47902 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC13.25□□□□□ -0.29
CDX1P47902 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CDX1P47902 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
CDX1P47902 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
CDX1P47902 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CDX1P47902 AC067930.6-201ENST00000623257 4947 ntBASIC13.25□□□□□ -0.29
CDX1P47902 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
CDX1P47902 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CDX1P47902 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CDX1P47902 AC007292.2-201ENST00000593524 1812 ntBASIC13.25□□□□□ -0.29
CDX1P47902 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC13.25□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms