Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SCN4AP35499 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SCN4AP35499 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SCN4AP35499 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC18.63■□□□□ 0.57
SCN4AP35499 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SCN4AP35499 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SCN4AP35499 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC18.63■□□□□ 0.57
SCN4AP35499 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC18.63■□□□□ 0.57
SCN4AP35499 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC18.63■□□□□ 0.57
SCN4AP35499 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
SCN4AP35499 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC18.63■□□□□ 0.57
SCN4AP35499 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.63■□□□□ 0.57
SCN4AP35499 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SCN4AP35499 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SCN4AP35499 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC18.63■□□□□ 0.57
SCN4AP35499 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
SCN4AP35499 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SCN4AP35499 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
SCN4AP35499 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SCN4AP35499 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
SCN4AP35499 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SCN4AP35499 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
SCN4AP35499 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
SCN4AP35499 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SCN4AP35499 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SCN4AP35499 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SCN4AP35499 KLF2P2-201ENST00000416807 1039 ntBASIC18.63■□□□□ 0.57
SCN4AP35499 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC18.63■□□□□ 0.57
SCN4AP35499 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SCN4AP35499 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC18.63■□□□□ 0.57
SCN4AP35499 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC18.63■□□□□ 0.57
SCN4AP35499 OARD1-204ENST00000464633 717 ntTSL 2 BASIC18.63■□□□□ 0.57
SCN4AP35499 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC18.63■□□□□ 0.57
SCN4AP35499 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SCN4AP35499 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC18.63■□□□□ 0.57
SCN4AP35499 ZACNP1-201ENST00000612259 710 ntBASIC18.63■□□□□ 0.57
SCN4AP35499 BX539320.1-201ENST00000623759 877 ntBASIC18.63■□□□□ 0.57
SCN4AP35499 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SCN4AP35499 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SCN4AP35499 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SCN4AP35499 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SCN4AP35499 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SCN4AP35499 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SCN4AP35499 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SCN4AP35499 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SCN4AP35499 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.62■□□□□ 0.57
SCN4AP35499 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SCN4AP35499 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
SCN4AP35499 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SCN4AP35499 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.62■□□□□ 0.57
SCN4AP35499 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC18.62■□□□□ 0.57
SCN4AP35499 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC18.62■□□□□ 0.57
SCN4AP35499 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SCN4AP35499 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
SCN4AP35499 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
SCN4AP35499 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SCN4AP35499 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
SCN4AP35499 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SCN4AP35499 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
SCN4AP35499 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC18.62■□□□□ 0.57
SCN4AP35499 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC18.62■□□□□ 0.57
SCN4AP35499 AL161670.2-201ENST00000557650 1227 ntBASIC18.62■□□□□ 0.57
SCN4AP35499 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC18.62■□□□□ 0.57
SCN4AP35499 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SCN4AP35499 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SCN4AP35499 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC18.62■□□□□ 0.57
SCN4AP35499 AC007613.1-201ENST00000572811 2597 ntBASIC18.62■□□□□ 0.57
SCN4AP35499 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SCN4AP35499 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
SCN4AP35499 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
SCN4AP35499 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SCN4AP35499 AC068880.1-201ENST00000507289 2297 ntBASIC18.61■□□□□ 0.57
SCN4AP35499 REXO1L1P-202ENST00000608646 1974 ntBASIC18.61■□□□□ 0.57
SCN4AP35499 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCN4AP35499 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SCN4AP35499 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCN4AP35499 Z97180.1-201ENST00000445173 988 ntBASIC18.61■□□□□ 0.57
SCN4AP35499 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC18.61■□□□□ 0.57
SCN4AP35499 NPM1P43-201ENST00000558669 786 ntBASIC18.61■□□□□ 0.57
SCN4AP35499 AC011491.1-203ENST00000637688 543 ntBASIC18.61■□□□□ 0.57
SCN4AP35499 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SCN4AP35499 AMT-233ENST00000636522 1620 ntTSL 2 BASIC18.61■□□□□ 0.57
SCN4AP35499 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
SCN4AP35499 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SCN4AP35499 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SCN4AP35499 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SCN4AP35499 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SCN4AP35499 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SCN4AP35499 RGS5-214ENST00000429865 754 ntTSL 3 BASIC18.6■□□□□ 0.57
SCN4AP35499 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
SCN4AP35499 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC18.6■□□□□ 0.57
SCN4AP35499 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SCN4AP35499 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
SCN4AP35499 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SCN4AP35499 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
SCN4AP35499 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SCN4AP35499 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SCN4AP35499 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC18.6■□□□□ 0.57
SCN4AP35499 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC18.6■□□□□ 0.57
SCN4AP35499 PDIA3P2-201ENST00000428073 158 ntBASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms