Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC15.62■□□□□ 0.09
HOXC4P09017 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
HOXC4P09017 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HOXC4P09017 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC15.62■□□□□ 0.09
HOXC4P09017 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
HOXC4P09017 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
HOXC4P09017 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
HOXC4P09017 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
HOXC4P09017 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
HOXC4P09017 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
HOXC4P09017 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
HOXC4P09017 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC15.62■□□□□ 0.09
HOXC4P09017 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC15.62■□□□□ 0.09
HOXC4P09017 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC15.62■□□□□ 0.09
HOXC4P09017 PTPA-220ENST00000436883 532 ntTSL 4 BASIC15.62■□□□□ 0.09
HOXC4P09017 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC15.62■□□□□ 0.09
HOXC4P09017 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC15.62■□□□□ 0.09
HOXC4P09017 AC011495.1-201ENST00000498085 584 ntBASIC15.62■□□□□ 0.09
HOXC4P09017 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC15.62■□□□□ 0.09
HOXC4P09017 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
HOXC4P09017 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HOXC4P09017 GCK-209ENST00000616242 2260 ntTSL 5 BASIC15.62■□□□□ 0.09
HOXC4P09017 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HOXC4P09017 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
HOXC4P09017 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HOXC4P09017 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
HOXC4P09017 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC15.62■□□□□ 0.09
HOXC4P09017 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
HOXC4P09017 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HOXC4P09017 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HOXC4P09017 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HOXC4P09017 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
HOXC4P09017 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC15.62■□□□□ 0.09
HOXC4P09017 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC15.61■□□□□ 0.09
HOXC4P09017 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HOXC4P09017 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC15.61■□□□□ 0.09
HOXC4P09017 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HOXC4P09017 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
HOXC4P09017 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HOXC4P09017 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
HOXC4P09017 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HOXC4P09017 RAC2-202ENST00000401529 569 ntTSL 4 BASIC15.61■□□□□ 0.09
HOXC4P09017 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
HOXC4P09017 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC15.61■□□□□ 0.09
HOXC4P09017 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
HOXC4P09017 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC15.61■□□□□ 0.09
HOXC4P09017 ELK1P1-201ENST00000485699 580 ntBASIC15.61■□□□□ 0.09
HOXC4P09017 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HOXC4P09017 AC104596.2-201ENST00000512793 793 ntBASIC15.61■□□□□ 0.09
HOXC4P09017 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC15.61■□□□□ 0.09
HOXC4P09017 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HOXC4P09017 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC15.61■□□□□ 0.09
HOXC4P09017 AC036164.1-201ENST00000570544 333 ntBASIC15.61■□□□□ 0.09
HOXC4P09017 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC15.61■□□□□ 0.09
HOXC4P09017 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC15.61■□□□□ 0.09
HOXC4P09017 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC15.61■□□□□ 0.09
HOXC4P09017 AL158212.4-201ENST00000624062 1286 ntBASIC15.61■□□□□ 0.09
HOXC4P09017 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC15.61■□□□□ 0.09
HOXC4P09017 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HOXC4P09017 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
HOXC4P09017 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
HOXC4P09017 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HOXC4P09017 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
HOXC4P09017 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HOXC4P09017 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
HOXC4P09017 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HOXC4P09017 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HOXC4P09017 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC15.61■□□□□ 0.09
HOXC4P09017 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
HOXC4P09017 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
HOXC4P09017 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
HOXC4P09017 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
HOXC4P09017 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC15.61■□□□□ 0.09
HOXC4P09017 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
HOXC4P09017 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC15.6■□□□□ 0.09
HOXC4P09017 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HOXC4P09017 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HOXC4P09017 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HOXC4P09017 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC15.6■□□□□ 0.09
HOXC4P09017 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HOXC4P09017 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
HOXC4P09017 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC15.6■□□□□ 0.09
HOXC4P09017 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC15.6■□□□□ 0.09
HOXC4P09017 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC15.6■□□□□ 0.09
HOXC4P09017 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC15.6■□□□□ 0.09
HOXC4P09017 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC15.6■□□□□ 0.09
HOXC4P09017 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HOXC4P09017 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HOXC4P09017 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HOXC4P09017 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HOXC4P09017 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC15.6■□□□□ 0.09
HOXC4P09017 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
HOXC4P09017 GSAP-205ENST00000430584 600 ntTSL 5 BASIC15.6■□□□□ 0.09
HOXC4P09017 WBP2-203ENST00000433525 928 ntTSL 2 BASIC15.6■□□□□ 0.09
HOXC4P09017 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC15.6■□□□□ 0.09
HOXC4P09017 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC15.6■□□□□ 0.09
HOXC4P09017 CFL1-212ENST00000531413 636 ntTSL 3 BASIC15.6■□□□□ 0.09
HOXC4P09017 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC15.6■□□□□ 0.09
HOXC4P09017 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HOXC4P09017 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms