Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTDNEP1O95476 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTDNEP1O95476 KLK8-202ENST00000320838 456 ntTSL 5 BASIC18.62■□□□□ 0.57
CTDNEP1O95476 RBPMS2P1-201ENST00000437762 623 ntBASIC18.62■□□□□ 0.57
CTDNEP1O95476 CCND1-203ENST00000536559 553 ntTSL 3 BASIC18.62■□□□□ 0.57
CTDNEP1O95476 AC092865.5-201ENST00000545435 363 ntBASIC18.62■□□□□ 0.57
CTDNEP1O95476 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC18.62■□□□□ 0.57
CTDNEP1O95476 AC026150.2-201ENST00000564693 1156 ntBASIC18.62■□□□□ 0.57
CTDNEP1O95476 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTDNEP1O95476 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC18.62■□□□□ 0.57
CTDNEP1O95476 METTL23-205ENST00000588302 925 ntTSL 5 BASIC18.62■□□□□ 0.57
CTDNEP1O95476 AC009093.7-201ENST00000623853 1223 ntBASIC18.62■□□□□ 0.57
CTDNEP1O95476 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTDNEP1O95476 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTDNEP1O95476 AC022532.1-201ENST00000624563 1728 ntBASIC18.62■□□□□ 0.57
CTDNEP1O95476 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC18.62■□□□□ 0.57
CTDNEP1O95476 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC18.62■□□□□ 0.57
CTDNEP1O95476 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTDNEP1O95476 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
CTDNEP1O95476 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC18.62■□□□□ 0.57
CTDNEP1O95476 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CTDNEP1O95476 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CTDNEP1O95476 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTDNEP1O95476 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CTDNEP1O95476 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CTDNEP1O95476 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CTDNEP1O95476 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTDNEP1O95476 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTDNEP1O95476 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC18.61■□□□□ 0.57
CTDNEP1O95476 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CTDNEP1O95476 AC090616.6-203ENST00000579186 1945 ntBASIC18.61■□□□□ 0.57
CTDNEP1O95476 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTDNEP1O95476 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
CTDNEP1O95476 KRT8P37-201ENST00000451609 1420 ntBASIC18.61■□□□□ 0.57
CTDNEP1O95476 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTDNEP1O95476 AC211486.1-202ENST00000416371 468 ntBASIC18.61■□□□□ 0.57
CTDNEP1O95476 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC18.61■□□□□ 0.57
CTDNEP1O95476 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTDNEP1O95476 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CTDNEP1O95476 AC211476.1-201ENST00000503899 468 ntBASIC18.61■□□□□ 0.57
CTDNEP1O95476 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC18.61■□□□□ 0.57
CTDNEP1O95476 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC18.61■□□□□ 0.57
CTDNEP1O95476 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTDNEP1O95476 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
CTDNEP1O95476 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CTDNEP1O95476 AC004835.2-201ENST00000603762 682 ntBASIC18.61■□□□□ 0.57
CTDNEP1O95476 AC027612.4-201ENST00000605371 583 ntBASIC18.61■□□□□ 0.57
CTDNEP1O95476 AL133215.2-201ENST00000609242 977 ntBASIC18.61■□□□□ 0.57
CTDNEP1O95476 AC018529.1-201ENST00000613063 361 ntBASIC18.61■□□□□ 0.57
CTDNEP1O95476 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTDNEP1O95476 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC18.61■□□□□ 0.57
CTDNEP1O95476 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTDNEP1O95476 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTDNEP1O95476 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTDNEP1O95476 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CTDNEP1O95476 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CTDNEP1O95476 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTDNEP1O95476 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CTDNEP1O95476 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC18.6■□□□□ 0.57
CTDNEP1O95476 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC18.6■□□□□ 0.57
CTDNEP1O95476 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CTDNEP1O95476 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CTDNEP1O95476 SLC9A7P1-201ENST00000554295 3311 ntBASIC18.6■□□□□ 0.57
CTDNEP1O95476 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CTDNEP1O95476 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC18.6■□□□□ 0.57
CTDNEP1O95476 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC18.6■□□□□ 0.57
CTDNEP1O95476 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CTDNEP1O95476 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CTDNEP1O95476 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC18.6■□□□□ 0.57
CTDNEP1O95476 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CTDNEP1O95476 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC18.6■□□□□ 0.57
CTDNEP1O95476 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC18.6■□□□□ 0.57
CTDNEP1O95476 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC18.6■□□□□ 0.57
CTDNEP1O95476 AC105021.1-202ENST00000570572 669 ntBASIC18.6■□□□□ 0.57
CTDNEP1O95476 AC097359.3-201ENST00000603982 1210 ntBASIC18.6■□□□□ 0.57
CTDNEP1O95476 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CTDNEP1O95476 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CTDNEP1O95476 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CTDNEP1O95476 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CTDNEP1O95476 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC18.6■□□□□ 0.57
CTDNEP1O95476 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CTDNEP1O95476 BID-213ENST00000615414 2236 ntTSL 5 BASIC18.59■□□□□ 0.57
CTDNEP1O95476 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC18.59■□□□□ 0.57
CTDNEP1O95476 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
CTDNEP1O95476 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC18.59■□□□□ 0.57
CTDNEP1O95476 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CTDNEP1O95476 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CTDNEP1O95476 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC18.59■□□□□ 0.57
CTDNEP1O95476 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC18.59■□□□□ 0.57
CTDNEP1O95476 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CTDNEP1O95476 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CTDNEP1O95476 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CTDNEP1O95476 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC18.59■□□□□ 0.57
CTDNEP1O95476 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CTDNEP1O95476 GOLGA6L17P-202ENST00000614358 1398 ntBASIC18.59■□□□□ 0.57
CTDNEP1O95476 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CTDNEP1O95476 RPP21-221ENST00000428040 594 ntTSL 2 BASIC18.59■□□□□ 0.57
CTDNEP1O95476 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CTDNEP1O95476 AP006288.1-201ENST00000446065 395 ntBASIC18.59■□□□□ 0.57
CTDNEP1O95476 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms