Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CNTN3Q9P232 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CNTN3Q9P232 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CNTN3Q9P232 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CNTN3Q9P232 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC17.3■□□□□ 0.36
CNTN3Q9P232 AZGP1P1-201ENST00000411909 902 ntBASIC17.3■□□□□ 0.36
CNTN3Q9P232 PIN1P1-201ENST00000412108 996 ntBASIC17.3■□□□□ 0.36
CNTN3Q9P232 RAD18-204ENST00000418463 563 ntTSL 4 BASIC17.3■□□□□ 0.36
CNTN3Q9P232 RAD18-205ENST00000421052 582 ntTSL 3 BASIC17.3■□□□□ 0.36
CNTN3Q9P232 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC17.3■□□□□ 0.36
CNTN3Q9P232 CRB3P1-201ENST00000449338 276 ntBASIC17.3■□□□□ 0.36
CNTN3Q9P232 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC17.3■□□□□ 0.36
CNTN3Q9P232 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC17.3■□□□□ 0.36
CNTN3Q9P232 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC17.3■□□□□ 0.36
CNTN3Q9P232 AC190387.1-201ENST00000551683 408 ntBASIC17.3■□□□□ 0.36
CNTN3Q9P232 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CNTN3Q9P232 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CNTN3Q9P232 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC17.3■□□□□ 0.36
CNTN3Q9P232 AC074044.1-201ENST00000609673 707 ntBASIC17.3■□□□□ 0.36
CNTN3Q9P232 AC004461.2-201ENST00000629517 803 ntBASIC17.3■□□□□ 0.36
CNTN3Q9P232 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC17.3■□□□□ 0.36
CNTN3Q9P232 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC17.3■□□□□ 0.36
CNTN3Q9P232 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC17.3■□□□□ 0.36
CNTN3Q9P232 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CNTN3Q9P232 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CNTN3Q9P232 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC17.3■□□□□ 0.36
CNTN3Q9P232 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CNTN3Q9P232 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CNTN3Q9P232 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
CNTN3Q9P232 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CNTN3Q9P232 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CNTN3Q9P232 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CNTN3Q9P232 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CNTN3Q9P232 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CNTN3Q9P232 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CNTN3Q9P232 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CNTN3Q9P232 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CNTN3Q9P232 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CNTN3Q9P232 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CNTN3Q9P232 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CNTN3Q9P232 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC17.29■□□□□ 0.36
CNTN3Q9P232 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CNTN3Q9P232 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.29■□□□□ 0.36
CNTN3Q9P232 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CNTN3Q9P232 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC17.29■□□□□ 0.36
CNTN3Q9P232 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC17.29■□□□□ 0.36
CNTN3Q9P232 TAF8-206ENST00000472818 719 ntTSL 2 BASIC17.29■□□□□ 0.36
CNTN3Q9P232 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC17.29■□□□□ 0.36
CNTN3Q9P232 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC17.29■□□□□ 0.36
CNTN3Q9P232 ARL16-202ENST00000570561 768 ntTSL 2 BASIC17.29■□□□□ 0.36
CNTN3Q9P232 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
CNTN3Q9P232 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC17.29■□□□□ 0.36
CNTN3Q9P232 AC004233.3-201ENST00000607794 1269 ntBASIC17.29■□□□□ 0.36
CNTN3Q9P232 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC17.29■□□□□ 0.36
CNTN3Q9P232 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CNTN3Q9P232 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CNTN3Q9P232 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CNTN3Q9P232 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC17.29■□□□□ 0.36
CNTN3Q9P232 AL596087.1-201ENST00000400979 1969 ntBASIC17.29■□□□□ 0.36
CNTN3Q9P232 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CNTN3Q9P232 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC17.29■□□□□ 0.36
CNTN3Q9P232 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CNTN3Q9P232 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CNTN3Q9P232 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC17.29■□□□□ 0.36
CNTN3Q9P232 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC17.29■□□□□ 0.36
CNTN3Q9P232 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
CNTN3Q9P232 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC17.29■□□□□ 0.36
CNTN3Q9P232 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.29■□□□□ 0.36
CNTN3Q9P232 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC17.29■□□□□ 0.36
CNTN3Q9P232 Z97205.2-201ENST00000564697 1639 ntBASIC17.29■□□□□ 0.36
CNTN3Q9P232 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
CNTN3Q9P232 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CNTN3Q9P232 SP100-205ENST00000409824 1802 ntTSL 5 BASIC17.28■□□□□ 0.36
CNTN3Q9P232 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CNTN3Q9P232 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.28■□□□□ 0.36
CNTN3Q9P232 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CNTN3Q9P232 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CNTN3Q9P232 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CNTN3Q9P232 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CNTN3Q9P232 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CNTN3Q9P232 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CNTN3Q9P232 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
CNTN3Q9P232 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CNTN3Q9P232 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
CNTN3Q9P232 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CNTN3Q9P232 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
CNTN3Q9P232 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC17.28■□□□□ 0.36
CNTN3Q9P232 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CNTN3Q9P232 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CNTN3Q9P232 COX11-202ENST00000571584 1108 ntTSL 2 BASIC17.28■□□□□ 0.36
CNTN3Q9P232 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC17.28■□□□□ 0.36
CNTN3Q9P232 SPDYE22P-201ENST00000582158 798 ntBASIC17.28■□□□□ 0.36
CNTN3Q9P232 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CNTN3Q9P232 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CNTN3Q9P232 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CNTN3Q9P232 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CNTN3Q9P232 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
CNTN3Q9P232 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CNTN3Q9P232 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CNTN3Q9P232 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms