Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL20A1Q9P218 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL20A1Q9P218 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL20A1Q9P218 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL20A1Q9P218 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
COL20A1Q9P218 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC18.11■□□□□ 0.49
COL20A1Q9P218 AC136604.1-201ENST00000418535 575 ntBASIC18.11■□□□□ 0.49
COL20A1Q9P218 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC18.11■□□□□ 0.49
COL20A1Q9P218 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC18.11■□□□□ 0.49
COL20A1Q9P218 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC18.11■□□□□ 0.49
COL20A1Q9P218 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC18.11■□□□□ 0.49
COL20A1Q9P218 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
COL20A1Q9P218 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC18.11■□□□□ 0.49
COL20A1Q9P218 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC18.11■□□□□ 0.49
COL20A1Q9P218 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC18.11■□□□□ 0.49
COL20A1Q9P218 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC18.11■□□□□ 0.49
COL20A1Q9P218 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC18.11■□□□□ 0.49
COL20A1Q9P218 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL20A1Q9P218 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL20A1Q9P218 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC18.11■□□□□ 0.49
COL20A1Q9P218 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC18.11■□□□□ 0.49
COL20A1Q9P218 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL20A1Q9P218 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
COL20A1Q9P218 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL20A1Q9P218 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
COL20A1Q9P218 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL20A1Q9P218 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL20A1Q9P218 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL20A1Q9P218 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL20A1Q9P218 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC18.1■□□□□ 0.49
COL20A1Q9P218 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
COL20A1Q9P218 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL20A1Q9P218 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL20A1Q9P218 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC18.1■□□□□ 0.49
COL20A1Q9P218 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL20A1Q9P218 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL20A1Q9P218 HCG11-201ENST00000411553 5696 ntBASIC18.1■□□□□ 0.49
COL20A1Q9P218 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC18.1■□□□□ 0.49
COL20A1Q9P218 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL20A1Q9P218 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
COL20A1Q9P218 CLK3P2-201ENST00000427566 1453 ntBASIC18.1■□□□□ 0.49
COL20A1Q9P218 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
COL20A1Q9P218 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL20A1Q9P218 GK-202ENST00000378941 458 ntTSL 3 BASIC18.1■□□□□ 0.49
COL20A1Q9P218 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC18.1■□□□□ 0.49
COL20A1Q9P218 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC18.1■□□□□ 0.49
COL20A1Q9P218 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC18.1■□□□□ 0.49
COL20A1Q9P218 GALT-202ENST00000450095 1280 ntTSL 2 BASIC18.1■□□□□ 0.49
COL20A1Q9P218 RN7SL752P-201ENST00000463779 287 ntBASIC18.1■□□□□ 0.49
COL20A1Q9P218 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC18.1■□□□□ 0.49
COL20A1Q9P218 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC18.1■□□□□ 0.49
COL20A1Q9P218 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL20A1Q9P218 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC18.1■□□□□ 0.49
COL20A1Q9P218 AL450472.2-201ENST00000603663 1156 ntBASIC18.1■□□□□ 0.49
COL20A1Q9P218 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC18.1■□□□□ 0.49
COL20A1Q9P218 WFDC1-204ENST00000613603 549 ntBASIC18.1■□□□□ 0.49
COL20A1Q9P218 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.1■□□□□ 0.49
COL20A1Q9P218 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL20A1Q9P218 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL20A1Q9P218 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL20A1Q9P218 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL20A1Q9P218 WT1-209ENST00000530998 2421 ntTSL 2 BASIC18.1■□□□□ 0.49
COL20A1Q9P218 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL20A1Q9P218 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL20A1Q9P218 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL20A1Q9P218 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL20A1Q9P218 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC18.09■□□□□ 0.49
COL20A1Q9P218 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL20A1Q9P218 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL20A1Q9P218 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC18.09■□□□□ 0.49
COL20A1Q9P218 AC020916.1-201ENST00000587762 1774 ntBASIC18.09■□□□□ 0.49
COL20A1Q9P218 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL20A1Q9P218 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC18.09■□□□□ 0.49
COL20A1Q9P218 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC18.09■□□□□ 0.49
COL20A1Q9P218 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.09■□□□□ 0.49
COL20A1Q9P218 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL20A1Q9P218 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL20A1Q9P218 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
COL20A1Q9P218 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
COL20A1Q9P218 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
COL20A1Q9P218 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
COL20A1Q9P218 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC18.09■□□□□ 0.49
COL20A1Q9P218 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC18.09■□□□□ 0.49
COL20A1Q9P218 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
COL20A1Q9P218 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC18.09■□□□□ 0.49
COL20A1Q9P218 KRT17P7-201ENST00000451704 1104 ntBASIC18.09■□□□□ 0.49
COL20A1Q9P218 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL20A1Q9P218 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC18.09■□□□□ 0.49
COL20A1Q9P218 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC18.09■□□□□ 0.49
COL20A1Q9P218 RRP7BP-205ENST00000566851 833 ntBASIC18.09■□□□□ 0.49
COL20A1Q9P218 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC18.09■□□□□ 0.49
COL20A1Q9P218 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
COL20A1Q9P218 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL20A1Q9P218 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.09■□□□□ 0.49
COL20A1Q9P218 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
COL20A1Q9P218 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC18.09■□□□□ 0.49
COL20A1Q9P218 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
COL20A1Q9P218 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
COL20A1Q9P218 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL20A1Q9P218 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms