Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SCAPERQ9BY12 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
SCAPERQ9BY12 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SCAPERQ9BY12 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC23.81■■□□□ 1.4
SCAPERQ9BY12 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC23.81■■□□□ 1.4
SCAPERQ9BY12 MPRIPP1-201ENST00000452433 1089 ntBASIC23.81■■□□□ 1.4
SCAPERQ9BY12 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC23.81■■□□□ 1.4
SCAPERQ9BY12 RNA5SP486-201ENST00000515961 83 ntBASIC23.81■■□□□ 1.4
SCAPERQ9BY12 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC23.81■■□□□ 1.4
SCAPERQ9BY12 CMC2-214ENST00000565925 640 ntTSL 5 BASIC23.81■■□□□ 1.4
SCAPERQ9BY12 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SCAPERQ9BY12 AL451050.2-201ENST00000606967 682 ntBASIC23.81■■□□□ 1.4
SCAPERQ9BY12 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SCAPERQ9BY12 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SCAPERQ9BY12 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
SCAPERQ9BY12 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SCAPERQ9BY12 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
SCAPERQ9BY12 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SCAPERQ9BY12 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SCAPERQ9BY12 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC23.8■■□□□ 1.4
SCAPERQ9BY12 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
SCAPERQ9BY12 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
SCAPERQ9BY12 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SCAPERQ9BY12 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SCAPERQ9BY12 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SCAPERQ9BY12 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SCAPERQ9BY12 HSPB1P2-201ENST00000448722 546 ntBASIC23.8■■□□□ 1.4
SCAPERQ9BY12 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SCAPERQ9BY12 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC23.8■■□□□ 1.4
SCAPERQ9BY12 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC23.8■■□□□ 1.4
SCAPERQ9BY12 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC23.8■■□□□ 1.4
SCAPERQ9BY12 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC23.8■■□□□ 1.4
SCAPERQ9BY12 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC23.8■■□□□ 1.4
SCAPERQ9BY12 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC23.8■■□□□ 1.4
SCAPERQ9BY12 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SCAPERQ9BY12 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SCAPERQ9BY12 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
SCAPERQ9BY12 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SCAPERQ9BY12 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC23.8■■□□□ 1.4
SCAPERQ9BY12 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SCAPERQ9BY12 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SCAPERQ9BY12 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SCAPERQ9BY12 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SCAPERQ9BY12 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC23.79■■□□□ 1.4
SCAPERQ9BY12 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SCAPERQ9BY12 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC23.79■■□□□ 1.4
SCAPERQ9BY12 KRT18P25-201ENST00000508931 1278 ntBASIC23.79■■□□□ 1.4
SCAPERQ9BY12 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC23.79■■□□□ 1.4
SCAPERQ9BY12 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC23.79■■□□□ 1.4
SCAPERQ9BY12 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC23.79■■□□□ 1.4
SCAPERQ9BY12 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
SCAPERQ9BY12 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC23.79■■□□□ 1.4
SCAPERQ9BY12 KRT8P35-201ENST00000483942 1338 ntBASIC23.79■■□□□ 1.4
SCAPERQ9BY12 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SCAPERQ9BY12 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SCAPERQ9BY12 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SCAPERQ9BY12 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC23.79■■□□□ 1.4
SCAPERQ9BY12 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
SCAPERQ9BY12 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SCAPERQ9BY12 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
SCAPERQ9BY12 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC23.79■■□□□ 1.4
SCAPERQ9BY12 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
SCAPERQ9BY12 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SCAPERQ9BY12 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC23.79■■□□□ 1.4
SCAPERQ9BY12 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
SCAPERQ9BY12 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC23.78■■□□□ 1.4
SCAPERQ9BY12 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
SCAPERQ9BY12 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
SCAPERQ9BY12 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
SCAPERQ9BY12 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SCAPERQ9BY12 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC23.78■■□□□ 1.4
SCAPERQ9BY12 IMP3P2-201ENST00000489760 475 ntBASIC23.78■■□□□ 1.4
SCAPERQ9BY12 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
SCAPERQ9BY12 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC23.78■■□□□ 1.4
SCAPERQ9BY12 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC23.78■■□□□ 1.4
SCAPERQ9BY12 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
SCAPERQ9BY12 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
SCAPERQ9BY12 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SCAPERQ9BY12 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SCAPERQ9BY12 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
SCAPERQ9BY12 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
SCAPERQ9BY12 OS9-205ENST00000413095 1660 ntTSL 2 BASIC23.78■■□□□ 1.4
SCAPERQ9BY12 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
SCAPERQ9BY12 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SCAPERQ9BY12 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SCAPERQ9BY12 CNN2P10-201ENST00000443067 918 ntBASIC23.77■■□□□ 1.4
SCAPERQ9BY12 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC23.77■■□□□ 1.4
SCAPERQ9BY12 RN7SL769P-201ENST00000469386 295 ntBASIC23.77■■□□□ 1.4
SCAPERQ9BY12 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC23.77■■□□□ 1.4
SCAPERQ9BY12 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SCAPERQ9BY12 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC23.77■■□□□ 1.4
SCAPERQ9BY12 AC097724.1-201ENST00000609581 426 ntBASIC23.77■■□□□ 1.4
SCAPERQ9BY12 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC23.77■■□□□ 1.4
SCAPERQ9BY12 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SCAPERQ9BY12 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC23.77■■□□□ 1.4
SCAPERQ9BY12 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SCAPERQ9BY12 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
SCAPERQ9BY12 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SCAPERQ9BY12 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
SCAPERQ9BY12 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC23.77■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms