Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 FUK-207ENST00000571514 3054 ntTSL 2 BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 AC112492.5-201ENST00000421897 457 ntBASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 NAA38-206ENST00000576384 424 ntTSL 2 BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 PRR29-204ENST00000577953 565 ntTSL 4 BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 AC087499.5-201ENST00000452760 1342 ntBASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 AC069224.1-201ENST00000566372 1715 ntBASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
SH3RF1Q7Z6J0 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 RPL37AP1-201ENST00000412502 279 ntBASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 Six3os1_5.1-201ENST00000611000 271 ntBASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 AL162274.1-201ENST00000617191 1098 ntBASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC18.42■□□□□ 0.54
SH3RF1Q7Z6J0 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
SH3RF1Q7Z6J0 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SH3RF1Q7Z6J0 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SH3RF1Q7Z6J0 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SH3RF1Q7Z6J0 RELA-227ENST00000615805 2236 ntTSL 5 BASIC18.41■□□□□ 0.54
SH3RF1Q7Z6J0 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SH3RF1Q7Z6J0 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
SH3RF1Q7Z6J0 FOXO1B-201ENST00000504678 1527 ntBASIC18.41■□□□□ 0.54
SH3RF1Q7Z6J0 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SH3RF1Q7Z6J0 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SH3RF1Q7Z6J0 AC105233.2-201ENST00000523697 349 ntBASIC18.41■□□□□ 0.54
SH3RF1Q7Z6J0 AF228730.5-201ENST00000530288 346 ntBASIC18.41■□□□□ 0.54
SH3RF1Q7Z6J0 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC18.41■□□□□ 0.54
SH3RF1Q7Z6J0 AC104794.3-201ENST00000566840 1248 ntBASIC18.41■□□□□ 0.54
SH3RF1Q7Z6J0 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SH3RF1Q7Z6J0 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC18.41■□□□□ 0.54
SH3RF1Q7Z6J0 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SH3RF1Q7Z6J0 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms