Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
PKNOX1P55347 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC15.91■□□□□ 0.14
PKNOX1P55347 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
PKNOX1P55347 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
PKNOX1P55347 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PKNOX1P55347 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC15.91■□□□□ 0.14
PKNOX1P55347 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC15.91■□□□□ 0.14
PKNOX1P55347 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC15.91■□□□□ 0.14
PKNOX1P55347 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
PKNOX1P55347 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
PKNOX1P55347 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
PKNOX1P55347 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PKNOX1P55347 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PKNOX1P55347 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC15.91■□□□□ 0.14
PKNOX1P55347 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PKNOX1P55347 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
PKNOX1P55347 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
PKNOX1P55347 AC099063.4-201ENST00000641099 1602 ntBASIC15.9■□□□□ 0.14
PKNOX1P55347 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
PKNOX1P55347 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
PKNOX1P55347 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PKNOX1P55347 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PKNOX1P55347 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PKNOX1P55347 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PKNOX1P55347 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.9■□□□□ 0.14
PKNOX1P55347 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PKNOX1P55347 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PKNOX1P55347 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
PKNOX1P55347 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PKNOX1P55347 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC15.9■□□□□ 0.14
PKNOX1P55347 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
PKNOX1P55347 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
PKNOX1P55347 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PKNOX1P55347 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
PKNOX1P55347 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PKNOX1P55347 LCK-206ENST00000373564 2137 ntTSL 5 BASIC15.9■□□□□ 0.14
PKNOX1P55347 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC15.9■□□□□ 0.14
PKNOX1P55347 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC15.9■□□□□ 0.14
PKNOX1P55347 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PKNOX1P55347 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC15.9■□□□□ 0.14
PKNOX1P55347 AC098831.1-202ENST00000438821 336 ntBASIC15.9■□□□□ 0.14
PKNOX1P55347 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PKNOX1P55347 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC15.9■□□□□ 0.14
PKNOX1P55347 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC15.9■□□□□ 0.14
PKNOX1P55347 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC15.9■□□□□ 0.14
PKNOX1P55347 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC15.9■□□□□ 0.14
PKNOX1P55347 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PKNOX1P55347 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
PKNOX1P55347 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC15.9■□□□□ 0.14
PKNOX1P55347 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC15.9■□□□□ 0.14
PKNOX1P55347 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC15.9■□□□□ 0.14
PKNOX1P55347 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PKNOX1P55347 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PKNOX1P55347 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PKNOX1P55347 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PKNOX1P55347 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC15.9■□□□□ 0.14
PKNOX1P55347 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
PKNOX1P55347 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PKNOX1P55347 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PKNOX1P55347 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PKNOX1P55347 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PKNOX1P55347 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PKNOX1P55347 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PKNOX1P55347 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PKNOX1P55347 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC15.9■□□□□ 0.14
PKNOX1P55347 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC15.89■□□□□ 0.14
PKNOX1P55347 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
PKNOX1P55347 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PKNOX1P55347 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PKNOX1P55347 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PKNOX1P55347 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PKNOX1P55347 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC15.89■□□□□ 0.13
PKNOX1P55347 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC15.89■□□□□ 0.13
PKNOX1P55347 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
PKNOX1P55347 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PKNOX1P55347 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PKNOX1P55347 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PKNOX1P55347 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.89■□□□□ 0.13
PKNOX1P55347 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC15.89■□□□□ 0.13
PKNOX1P55347 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC15.89■□□□□ 0.13
PKNOX1P55347 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC15.89■□□□□ 0.13
PKNOX1P55347 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC15.89■□□□□ 0.13
PKNOX1P55347 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
PKNOX1P55347 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC15.89■□□□□ 0.13
PKNOX1P55347 CRYGEP-201ENST00000412192 528 ntBASIC15.89■□□□□ 0.13
PKNOX1P55347 AL031284.1-201ENST00000419297 478 ntBASIC15.89■□□□□ 0.13
PKNOX1P55347 FIS1-203ENST00000442303 631 ntTSL 3 BASIC15.89■□□□□ 0.13
PKNOX1P55347 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC15.89■□□□□ 0.13
PKNOX1P55347 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC15.89■□□□□ 0.13
PKNOX1P55347 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC15.89■□□□□ 0.13
PKNOX1P55347 AC109635.5-201ENST00000533593 962 ntBASIC15.89■□□□□ 0.13
PKNOX1P55347 CD63-210ENST00000550776 870 ntTSL 5 BASIC15.89■□□□□ 0.13
PKNOX1P55347 RN7SL510P-201ENST00000581311 263 ntBASIC15.89■□□□□ 0.13
PKNOX1P55347 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC15.89■□□□□ 0.13
PKNOX1P55347 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PKNOX1P55347 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
PKNOX1P55347 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC15.89■□□□□ 0.13
PKNOX1P55347 MIR7706-201ENST00000613747 67 ntBASIC15.89■□□□□ 0.13
PKNOX1P55347 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC15.89■□□□□ 0.13
PKNOX1P55347 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms