Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC15.12■□□□□ 0.01
CDH12P55289 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC15.12■□□□□ 0.01
CDH12P55289 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDH12P55289 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDH12P55289 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC15.12■□□□□ 0.01
CDH12P55289 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CDH12P55289 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDH12P55289 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CDH12P55289 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDH12P55289 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC15.11■□□□□ 0.01
CDH12P55289 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH12P55289 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDH12P55289 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH12P55289 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC15.11■□□□□ 0.01
CDH12P55289 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDH12P55289 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDH12P55289 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH12P55289 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH12P55289 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH12P55289 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH12P55289 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CDH12P55289 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
CDH12P55289 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH12P55289 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC15.11■□□□□ 0.01
CDH12P55289 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH12P55289 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC15.11■□□□□ 0.01
CDH12P55289 PRSS29P-201ENST00000440800 595 ntBASIC15.11■□□□□ 0.01
CDH12P55289 CXCL1P1-201ENST00000502804 216 ntBASIC15.11■□□□□ 0.01
CDH12P55289 MTRF1LP2-201ENST00000506027 1122 ntBASIC15.11■□□□□ 0.01
CDH12P55289 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH12P55289 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC15.11■□□□□ 0.01
CDH12P55289 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC15.11■□□□□ 0.01
CDH12P55289 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC15.11■□□□□ 0.01
CDH12P55289 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CDH12P55289 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC15.11■□□□□ 0.01
CDH12P55289 MIR4751-201ENST00000578027 74 ntBASIC15.11■□□□□ 0.01
CDH12P55289 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC15.11■□□□□ 0.01
CDH12P55289 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC15.11■□□□□ 0.01
CDH12P55289 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC15.11■□□□□ 0.01
CDH12P55289 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC15.11■□□□□ 0.01
CDH12P55289 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC15.11■□□□□ 0.01
CDH12P55289 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC15.11■□□□□ 0.01
CDH12P55289 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CDH12P55289 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH12P55289 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
CDH12P55289 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDH12P55289 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDH12P55289 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDH12P55289 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
CDH12P55289 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH12P55289 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH12P55289 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH12P55289 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDH12P55289 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDH12P55289 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH12P55289 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH12P55289 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH12P55289 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC15.1■□□□□ 0.01
CDH12P55289 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CDH12P55289 AC092919.2-201ENST00000623631 1645 ntBASIC15.1■□□□□ 0.01
CDH12P55289 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CDH12P55289 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH12P55289 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC15.1■□□□□ 0.01
CDH12P55289 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH12P55289 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
CDH12P55289 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH12P55289 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC15.1■□□□□ 0.01
CDH12P55289 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH12P55289 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH12P55289 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC15.1■□□□□ 0.01
CDH12P55289 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CDH12P55289 HMGA1P7-201ENST00000406908 502 ntBASIC15.1■□□□□ 0.01
CDH12P55289 ATP6V0CP3-201ENST00000417255 467 ntBASIC15.1■□□□□ 0.01
CDH12P55289 AC098831.1-202ENST00000438821 336 ntBASIC15.1■□□□□ 0.01
CDH12P55289 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CDH12P55289 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC15.1■□□□□ 0.01
CDH12P55289 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC15.1■□□□□ 0.01
CDH12P55289 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
CDH12P55289 AL160237.2-201ENST00000556165 472 ntBASIC15.1■□□□□ 0.01
CDH12P55289 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC15.1■□□□□ 0.01
CDH12P55289 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC15.1■□□□□ 0.01
CDH12P55289 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH12P55289 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH12P55289 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
CDH12P55289 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CDH12P55289 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC15.1■□□□□ 0.01
CDH12P55289 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC15.1■□□□□ 0.01
CDH12P55289 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CDH12P55289 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH12P55289 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH12P55289 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH12P55289 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC15.1■□□□□ 0.01
CDH12P55289 U82695.1-201ENST00000635752 1889 ntBASIC15.1■□□□□ 0.01
CDH12P55289 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC15.09■□□□□ 0.01
CDH12P55289 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDH12P55289 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC15.09■□□□□ 0.01
CDH12P55289 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDH12P55289 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDH12P55289 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDH12P55289 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms