Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC18.49■□□□□ 0.55
HMGCS2P54868 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HMGCS2P54868 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC18.49■□□□□ 0.55
HMGCS2P54868 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC18.49■□□□□ 0.55
HMGCS2P54868 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HMGCS2P54868 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGCS2P54868 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HMGCS2P54868 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HMGCS2P54868 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
HMGCS2P54868 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGCS2P54868 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGCS2P54868 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGCS2P54868 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC18.48■□□□□ 0.55
HMGCS2P54868 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGCS2P54868 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGCS2P54868 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGCS2P54868 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC18.48■□□□□ 0.55
HMGCS2P54868 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC18.48■□□□□ 0.55
HMGCS2P54868 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
HMGCS2P54868 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGCS2P54868 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGCS2P54868 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGCS2P54868 APOA1-205ENST00000375329 927 ntTSL 2 BASIC18.48■□□□□ 0.55
HMGCS2P54868 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
HMGCS2P54868 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGCS2P54868 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGCS2P54868 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGCS2P54868 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC18.48■□□□□ 0.55
HMGCS2P54868 APRT-204ENST00000563655 709 ntTSL 5 BASIC18.48■□□□□ 0.55
HMGCS2P54868 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HMGCS2P54868 AL022328.1-201ENST00000610050 478 ntBASIC18.48■□□□□ 0.55
HMGCS2P54868 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC18.48■□□□□ 0.55
HMGCS2P54868 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HMGCS2P54868 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGCS2P54868 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HMGCS2P54868 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HMGCS2P54868 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGCS2P54868 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC18.47■□□□□ 0.55
HMGCS2P54868 AC092171.3-201ENST00000610122 2651 ntBASIC18.47■□□□□ 0.55
HMGCS2P54868 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGCS2P54868 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC18.47■□□□□ 0.55
HMGCS2P54868 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGCS2P54868 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HMGCS2P54868 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGCS2P54868 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC18.47■□□□□ 0.55
HMGCS2P54868 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC18.47■□□□□ 0.55
HMGCS2P54868 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC18.47■□□□□ 0.55
HMGCS2P54868 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGCS2P54868 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC18.47■□□□□ 0.55
HMGCS2P54868 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
HMGCS2P54868 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC18.47■□□□□ 0.55
HMGCS2P54868 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGCS2P54868 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC18.47■□□□□ 0.55
HMGCS2P54868 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGCS2P54868 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HMGCS2P54868 TOMM22P5-201ENST00000416399 439 ntBASIC18.47■□□□□ 0.55
HMGCS2P54868 USP40-206ENST00000443711 628 ntTSL 2 BASIC18.47■□□□□ 0.55
HMGCS2P54868 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC18.47■□□□□ 0.55
HMGCS2P54868 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC18.47■□□□□ 0.55
HMGCS2P54868 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC18.47■□□□□ 0.55
HMGCS2P54868 AC124283.3-201ENST00000570869 594 ntBASIC18.47■□□□□ 0.55
HMGCS2P54868 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC18.47■□□□□ 0.55
HMGCS2P54868 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC18.47■□□□□ 0.55
HMGCS2P54868 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC18.47■□□□□ 0.55
HMGCS2P54868 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGCS2P54868 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC18.47■□□□□ 0.55
HMGCS2P54868 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HMGCS2P54868 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
HMGCS2P54868 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGCS2P54868 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGCS2P54868 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGCS2P54868 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HMGCS2P54868 INTS4P2-202ENST00000614726 2019 ntBASIC18.47■□□□□ 0.55
HMGCS2P54868 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGCS2P54868 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HMGCS2P54868 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC18.47■□□□□ 0.55
HMGCS2P54868 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGCS2P54868 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
HMGCS2P54868 AC134407.2-201ENST00000625089 1978 ntBASIC18.46■□□□□ 0.55
HMGCS2P54868 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HMGCS2P54868 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.46■□□□□ 0.55
HMGCS2P54868 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGCS2P54868 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC18.46■□□□□ 0.55
HMGCS2P54868 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC18.46■□□□□ 0.55
HMGCS2P54868 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGCS2P54868 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
HMGCS2P54868 AC099336.1-201ENST00000417053 1171 ntBASIC18.46■□□□□ 0.55
HMGCS2P54868 USB1-202ENST00000423271 1217 ntTSL 2 BASIC18.46■□□□□ 0.55
HMGCS2P54868 AC134915.1-201ENST00000426461 574 ntBASIC18.46■□□□□ 0.55
HMGCS2P54868 RPL28-203ENST00000428193 573 ntTSL 2 BASIC18.46■□□□□ 0.55
HMGCS2P54868 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HMGCS2P54868 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
HMGCS2P54868 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
HMGCS2P54868 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HMGCS2P54868 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC18.46■□□□□ 0.55
HMGCS2P54868 USB1-203ENST00000539737 1212 ntTSL 2 BASIC18.46■□□□□ 0.55
HMGCS2P54868 AL583810.1-201ENST00000553344 1045 ntBASIC18.46■□□□□ 0.55
HMGCS2P54868 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC18.46■□□□□ 0.55
HMGCS2P54868 RPL28-207ENST00000558815 616 ntTSL 2 BASIC18.46■□□□□ 0.55
HMGCS2P54868 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms