Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A4P53420 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A4P53420 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL4A4P53420 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL4A4P53420 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.96■□□□□ 0.31
COL4A4P53420 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
COL4A4P53420 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL4A4P53420 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
COL4A4P53420 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
COL4A4P53420 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
COL4A4P53420 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
COL4A4P53420 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL4A4P53420 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
COL4A4P53420 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL4A4P53420 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
COL4A4P53420 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC16.96■□□□□ 0.31
COL4A4P53420 NEU3-202ENST00000526068 431 ntTSL 2 BASIC16.96■□□□□ 0.31
COL4A4P53420 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC16.96■□□□□ 0.31
COL4A4P53420 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL4A4P53420 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.96■□□□□ 0.31
COL4A4P53420 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL4A4P53420 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC16.96■□□□□ 0.31
COL4A4P53420 LTB4R2-202ENST00000528054 3092 ntBASIC16.96■□□□□ 0.31
COL4A4P53420 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC16.96■□□□□ 0.31
COL4A4P53420 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.96■□□□□ 0.31
COL4A4P53420 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
COL4A4P53420 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL4A4P53420 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL4A4P53420 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
COL4A4P53420 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL4A4P53420 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.3
COL4A4P53420 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
COL4A4P53420 AC006449.5-201ENST00000610658 2098 ntBASIC16.95■□□□□ 0.3
COL4A4P53420 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
COL4A4P53420 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.95■□□□□ 0.3
COL4A4P53420 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.95■□□□□ 0.3
COL4A4P53420 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL4A4P53420 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL4A4P53420 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL4A4P53420 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL4A4P53420 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL4A4P53420 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL4A4P53420 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL4A4P53420 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL4A4P53420 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL4A4P53420 KRT8P37-201ENST00000451609 1420 ntBASIC16.95■□□□□ 0.3
COL4A4P53420 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC16.95■□□□□ 0.3
COL4A4P53420 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC16.95■□□□□ 0.3
COL4A4P53420 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.95■□□□□ 0.3
COL4A4P53420 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC16.95■□□□□ 0.3
COL4A4P53420 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC16.95■□□□□ 0.3
COL4A4P53420 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC16.95■□□□□ 0.3
COL4A4P53420 METTL26-214ENST00000614890 801 ntTSL 3 BASIC16.95■□□□□ 0.3
COL4A4P53420 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL4A4P53420 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL4A4P53420 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL4A4P53420 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
COL4A4P53420 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
COL4A4P53420 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.95■□□□□ 0.3
COL4A4P53420 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL4A4P53420 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL4A4P53420 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL4A4P53420 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL4A4P53420 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL4A4P53420 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
COL4A4P53420 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC16.95■□□□□ 0.3
COL4A4P53420 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC16.95■□□□□ 0.3
COL4A4P53420 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC16.95■□□□□ 0.3
COL4A4P53420 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL4A4P53420 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
COL4A4P53420 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
COL4A4P53420 AC074338.1-201ENST00000416825 156 ntBASIC16.94■□□□□ 0.3
COL4A4P53420 VDAC1P7-201ENST00000462417 847 ntBASIC16.94■□□□□ 0.3
COL4A4P53420 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC16.94■□□□□ 0.3
COL4A4P53420 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC16.94■□□□□ 0.3
COL4A4P53420 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC16.94■□□□□ 0.3
COL4A4P53420 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
COL4A4P53420 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC16.94■□□□□ 0.3
COL4A4P53420 AL008638.5-201ENST00000623814 1298 ntBASIC16.94■□□□□ 0.3
COL4A4P53420 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL4A4P53420 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC16.94■□□□□ 0.3
COL4A4P53420 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL4A4P53420 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL4A4P53420 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL4A4P53420 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
COL4A4P53420 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL4A4P53420 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.94■□□□□ 0.3
COL4A4P53420 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC16.94■□□□□ 0.3
COL4A4P53420 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL4A4P53420 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL4A4P53420 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL4A4P53420 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL4A4P53420 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL4A4P53420 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL4A4P53420 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL4A4P53420 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL4A4P53420 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
COL4A4P53420 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.94■□□□□ 0.3
COL4A4P53420 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC16.94■□□□□ 0.3
COL4A4P53420 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms