Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
HOXA1P49639 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HOXA1P49639 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HOXA1P49639 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HOXA1P49639 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC13.51□□□□□ -0.25
HOXA1P49639 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC13.51□□□□□ -0.25
HOXA1P49639 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
HOXA1P49639 AL356585.2-201ENST00000625078 2396 ntBASIC13.51□□□□□ -0.25
HOXA1P49639 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
HOXA1P49639 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HOXA1P49639 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC13.51□□□□□ -0.25
HOXA1P49639 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC13.51□□□□□ -0.25
HOXA1P49639 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
HOXA1P49639 ME2P1-201ENST00000426028 1970 ntBASIC13.51□□□□□ -0.25
HOXA1P49639 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HOXA1P49639 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HOXA1P49639 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC13.51□□□□□ -0.25
HOXA1P49639 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
HOXA1P49639 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
HOXA1P49639 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
HOXA1P49639 MYO15B-237ENST00000642007 4893 ntBASIC13.51□□□□□ -0.25
HOXA1P49639 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HOXA1P49639 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HOXA1P49639 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HOXA1P49639 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HOXA1P49639 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC13.51□□□□□ -0.25
HOXA1P49639 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
HOXA1P49639 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HOXA1P49639 AC243591.1-201ENST00000452967 1364 ntBASIC13.51□□□□□ -0.25
HOXA1P49639 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HOXA1P49639 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC13.51□□□□□ -0.25
HOXA1P49639 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HOXA1P49639 AP002414.1-201ENST00000391405 1147 ntBASIC13.51□□□□□ -0.25
HOXA1P49639 RCN1P1-201ENST00000400413 996 ntBASIC13.51□□□□□ -0.25
HOXA1P49639 DRAXINP1-201ENST00000437611 948 ntBASIC13.51□□□□□ -0.25
HOXA1P49639 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC13.51□□□□□ -0.25
HOXA1P49639 AC104819.1-201ENST00000504587 486 ntBASIC13.51□□□□□ -0.25
HOXA1P49639 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC13.51□□□□□ -0.25
HOXA1P49639 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC13.51□□□□□ -0.25
HOXA1P49639 DUX4L17-201ENST00000557360 1267 ntBASIC13.51□□□□□ -0.25
HOXA1P49639 TPSP2-201ENST00000561760 610 ntBASIC13.51□□□□□ -0.25
HOXA1P49639 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC13.51□□□□□ -0.25
HOXA1P49639 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC13.51□□□□□ -0.25
HOXA1P49639 ABBA01031661.1-201ENST00000634362 1253 ntBASIC13.51□□□□□ -0.25
HOXA1P49639 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC13.51□□□□□ -0.25
HOXA1P49639 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC13.51□□□□□ -0.25
HOXA1P49639 AP000867.4-201ENST00000641616 219 ntBASIC13.51□□□□□ -0.25
HOXA1P49639 TPO-203ENST00000346956 2923 ntTSL 5 BASIC13.51□□□□□ -0.25
HOXA1P49639 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC13.51□□□□□ -0.25
HOXA1P49639 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
HOXA1P49639 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
HOXA1P49639 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HOXA1P49639 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC13.51□□□□□ -0.25
HOXA1P49639 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HOXA1P49639 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC13.51□□□□□ -0.25
HOXA1P49639 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
HOXA1P49639 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC13.51□□□□□ -0.25
HOXA1P49639 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
HOXA1P49639 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC13.51□□□□□ -0.25
HOXA1P49639 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
HOXA1P49639 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC13.5□□□□□ -0.25
HOXA1P49639 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC13.5□□□□□ -0.25
HOXA1P49639 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXA1P49639 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
HOXA1P49639 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HOXA1P49639 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXA1P49639 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC13.5□□□□□ -0.25
HOXA1P49639 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXA1P49639 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC13.5□□□□□ -0.25
HOXA1P49639 MTHFR-217ENST00000641820 1569 ntBASIC13.5□□□□□ -0.25
HOXA1P49639 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXA1P49639 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXA1P49639 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HOXA1P49639 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXA1P49639 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXA1P49639 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXA1P49639 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HOXA1P49639 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXA1P49639 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXA1P49639 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC13.5□□□□□ -0.25
HOXA1P49639 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXA1P49639 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXA1P49639 SOD2-201ENST00000337404 991 ntTSL 2 BASIC13.5□□□□□ -0.25
HOXA1P49639 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXA1P49639 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC13.5□□□□□ -0.25
HOXA1P49639 AL031133.1-201ENST00000406807 723 ntBASIC13.5□□□□□ -0.25
HOXA1P49639 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC13.5□□□□□ -0.25
HOXA1P49639 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC13.5□□□□□ -0.25
HOXA1P49639 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXA1P49639 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXA1P49639 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC13.5□□□□□ -0.25
HOXA1P49639 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC13.5□□□□□ -0.25
HOXA1P49639 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC13.5□□□□□ -0.25
HOXA1P49639 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC13.5□□□□□ -0.25
HOXA1P49639 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC13.5□□□□□ -0.25
HOXA1P49639 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC13.5□□□□□ -0.25
HOXA1P49639 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HOXA1P49639 IL11-204ENST00000590625 1028 ntTSL 2 BASIC13.5□□□□□ -0.25
HOXA1P49639 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC13.5□□□□□ -0.25
HOXA1P49639 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms