Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
CDX1P47902 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CDX1P47902 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CDX1P47902 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CDX1P47902 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CDX1P47902 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC13.28□□□□□ -0.28
CDX1P47902 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CDX1P47902 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CDX1P47902 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CDX1P47902 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
CDX1P47902 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
CDX1P47902 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
CDX1P47902 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC13.28□□□□□ -0.28
CDX1P47902 DNAJB3-201ENST00000446806 729 ntBASIC13.28□□□□□ -0.28
CDX1P47902 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CDX1P47902 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC13.28□□□□□ -0.28
CDX1P47902 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC13.28□□□□□ -0.28
CDX1P47902 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC13.28□□□□□ -0.28
CDX1P47902 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC13.28□□□□□ -0.28
CDX1P47902 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC13.28□□□□□ -0.28
CDX1P47902 GPALPP1-207ENST00000611650 899 ntBASIC13.28□□□□□ -0.28
CDX1P47902 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
CDX1P47902 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
CDX1P47902 AC002310.6-201ENST00000624451 1377 ntBASIC13.28□□□□□ -0.28
CDX1P47902 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CDX1P47902 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CDX1P47902 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC13.28□□□□□ -0.28
CDX1P47902 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
CDX1P47902 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
CDX1P47902 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CDX1P47902 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
CDX1P47902 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CDX1P47902 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CDX1P47902 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
CDX1P47902 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC13.27□□□□□ -0.28
CDX1P47902 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
CDX1P47902 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC13.27□□□□□ -0.28
CDX1P47902 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
CDX1P47902 RHBDF1P1-201ENST00000427504 1941 ntBASIC13.27□□□□□ -0.28
CDX1P47902 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
CDX1P47902 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.28
CDX1P47902 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
CDX1P47902 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC13.27□□□□□ -0.28
CDX1P47902 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC13.27□□□□□ -0.28
CDX1P47902 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CDX1P47902 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC13.27□□□□□ -0.29
CDX1P47902 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC13.27□□□□□ -0.29
CDX1P47902 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
CDX1P47902 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC13.27□□□□□ -0.29
CDX1P47902 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC13.27□□□□□ -0.29
CDX1P47902 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC13.27□□□□□ -0.29
CDX1P47902 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC13.27□□□□□ -0.29
CDX1P47902 KRT18P2-201ENST00000447938 1258 ntBASIC13.27□□□□□ -0.29
CDX1P47902 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC13.27□□□□□ -0.29
CDX1P47902 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC13.27□□□□□ -0.29
CDX1P47902 AC096734.2-201ENST00000562054 433 ntBASIC13.27□□□□□ -0.29
CDX1P47902 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC13.27□□□□□ -0.29
CDX1P47902 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC13.27□□□□□ -0.29
CDX1P47902 MTDHP5-201ENST00000598980 586 ntBASIC13.27□□□□□ -0.29
CDX1P47902 AC006538.3-201ENST00000612495 578 ntBASIC13.27□□□□□ -0.29
CDX1P47902 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CDX1P47902 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CDX1P47902 AC129492.6-201ENST00000611383 1305 ntBASIC13.27□□□□□ -0.29
CDX1P47902 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC13.27□□□□□ -0.29
CDX1P47902 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC13.27□□□□□ -0.29
CDX1P47902 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
CDX1P47902 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CDX1P47902 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CDX1P47902 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
CDX1P47902 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
CDX1P47902 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC13.27□□□□□ -0.29
CDX1P47902 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
CDX1P47902 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
CDX1P47902 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC13.27□□□□□ -0.29
CDX1P47902 AC015656.1-201ENST00000624209 3578 ntBASIC13.27□□□□□ -0.29
CDX1P47902 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC13.27□□□□□ -0.29
CDX1P47902 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC13.27□□□□□ -0.29
CDX1P47902 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CDX1P47902 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC13.27□□□□□ -0.29
CDX1P47902 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC13.27□□□□□ -0.29
CDX1P47902 AC005252.3-201ENST00000623855 2258 ntBASIC13.27□□□□□ -0.29
CDX1P47902 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC13.27□□□□□ -0.29
CDX1P47902 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
CDX1P47902 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CDX1P47902 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CDX1P47902 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
CDX1P47902 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
CDX1P47902 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CDX1P47902 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CDX1P47902 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CDX1P47902 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CDX1P47902 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CDX1P47902 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC13.26□□□□□ -0.29
CDX1P47902 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CDX1P47902 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC13.26□□□□□ -0.29
CDX1P47902 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CDX1P47902 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CDX1P47902 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
CDX1P47902 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CDX1P47902 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms