Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RARRES2P9-201ENST00000565168 469 ntBASIC14.82□□□□□ -0.04
MSX1P28360 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
MSX1P28360 AC061975.2-201ENST00000581722 295 ntBASIC14.82□□□□□ -0.04
MSX1P28360 BX547991.1-201ENST00000582543 1206 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
MSX1P28360 RN7SL204P-201ENST00000582831 262 ntBASIC14.82□□□□□ -0.04
MSX1P28360 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC14.82□□□□□ -0.04
MSX1P28360 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
MSX1P28360 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
MSX1P28360 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
MSX1P28360 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC14.82□□□□□ -0.04
MSX1P28360 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
MSX1P28360 AC063926.2-201ENST00000623766 1308 ntBASIC14.82□□□□□ -0.04
MSX1P28360 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC14.82□□□□□ -0.04
MSX1P28360 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC14.82□□□□□ -0.04
MSX1P28360 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC14.82□□□□□ -0.04
MSX1P28360 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC14.82□□□□□ -0.04
MSX1P28360 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MSX1P28360 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MSX1P28360 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MSX1P28360 AC124067.4-201ENST00000519691 2379 ntBASIC14.82□□□□□ -0.04
MSX1P28360 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC14.82□□□□□ -0.04
MSX1P28360 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
MSX1P28360 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
MSX1P28360 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
MSX1P28360 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
MSX1P28360 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MSX1P28360 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC14.82□□□□□ -0.04
MSX1P28360 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MSX1P28360 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MSX1P28360 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
MSX1P28360 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX1P28360 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX1P28360 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX1P28360 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX1P28360 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
MSX1P28360 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX1P28360 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX1P28360 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC14.81□□□□□ -0.04
MSX1P28360 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
MSX1P28360 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX1P28360 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX1P28360 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX1P28360 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX1P28360 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX1P28360 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
MSX1P28360 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
MSX1P28360 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
MSX1P28360 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
MSX1P28360 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
MSX1P28360 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX1P28360 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX1P28360 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC14.81□□□□□ -0.04
MSX1P28360 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX1P28360 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
MSX1P28360 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC14.81□□□□□ -0.04
MSX1P28360 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC14.81□□□□□ -0.04
MSX1P28360 AC026150.2-201ENST00000564693 1156 ntBASIC14.81□□□□□ -0.04
MSX1P28360 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC14.81□□□□□ -0.04
MSX1P28360 AC012645.4-201ENST00000610691 1061 ntBASIC14.81□□□□□ -0.04
MSX1P28360 RAB34-224ENST00000636513 888 ntTSL 5 BASIC14.81□□□□□ -0.04
MSX1P28360 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
MSX1P28360 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX1P28360 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX1P28360 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX1P28360 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC14.81□□□□□ -0.04
MSX1P28360 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
MSX1P28360 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX1P28360 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX1P28360 FO538757.1-201ENST00000623083 1397 ntBASIC14.81□□□□□ -0.04
MSX1P28360 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
MSX1P28360 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC14.81□□□□□ -0.04
MSX1P28360 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX1P28360 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX1P28360 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX1P28360 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
MSX1P28360 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC14.81□□□□□ -0.04
MSX1P28360 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC14.81□□□□□ -0.04
MSX1P28360 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
MSX1P28360 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MSX1P28360 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
MSX1P28360 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC14.8□□□□□ -0.04
MSX1P28360 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX1P28360 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
MSX1P28360 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
MSX1P28360 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
MSX1P28360 AL596087.1-201ENST00000400979 1969 ntBASIC14.8□□□□□ -0.04
MSX1P28360 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
MSX1P28360 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX1P28360 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
MSX1P28360 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX1P28360 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX1P28360 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX1P28360 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX1P28360 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
MSX1P28360 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
MSX1P28360 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
MSX1P28360 TREML5P-201ENST00000421694 576 ntBASIC14.8□□□□□ -0.04
MSX1P28360 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC14.8□□□□□ -0.04
MSX1P28360 SPDYE14P-201ENST00000442619 822 ntBASIC14.8□□□□□ -0.04
MSX1P28360 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms